Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL5A3P25940 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
COL5A3P25940 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.53■□□□□ 0.4
COL5A3P25940 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
COL5A3P25940 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
COL5A3P25940 AIG1-203ENST00000367596 559 ntTSL 2 BASIC17.53■□□□□ 0.4
COL5A3P25940 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 AC010900.1-201ENST00000449849 1296 ntBASIC17.53■□□□□ 0.4
COL5A3P25940 ALG1L15P-201ENST00000482834 794 ntBASIC17.53■□□□□ 0.4
COL5A3P25940 AP003040.1-201ENST00000532044 1024 ntBASIC17.53■□□□□ 0.4
COL5A3P25940 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC17.53■□□□□ 0.4
COL5A3P25940 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC17.53■□□□□ 0.4
COL5A3P25940 RN7SL602P-201ENST00000578326 324 ntBASIC17.53■□□□□ 0.4
COL5A3P25940 RN7SL718P-201ENST00000581254 303 ntBASIC17.53■□□□□ 0.4
COL5A3P25940 PHF23-213ENST00000613632 850 ntTSL 5 BASIC17.53■□□□□ 0.4
COL5A3P25940 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 STK16-202ENST00000409260 1493 ntTSL 5 BASIC17.53■□□□□ 0.4
COL5A3P25940 AC008620.2-201ENST00000510294 1569 ntBASIC17.53■□□□□ 0.4
COL5A3P25940 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
COL5A3P25940 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
COL5A3P25940 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC17.53■□□□□ 0.4
COL5A3P25940 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
COL5A3P25940 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL5A3P25940 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC17.52■□□□□ 0.4
COL5A3P25940 AC147876.1-201ENST00000504408 322 ntBASIC17.52■□□□□ 0.4
COL5A3P25940 OR4A49P-201ENST00000527050 632 ntBASIC17.52■□□□□ 0.4
COL5A3P25940 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
COL5A3P25940 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC17.52■□□□□ 0.4
COL5A3P25940 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC17.52■□□□□ 0.4
COL5A3P25940 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC17.52■□□□□ 0.4
COL5A3P25940 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC17.52■□□□□ 0.4
COL5A3P25940 CSTP2-201ENST00000610599 398 ntBASIC17.52■□□□□ 0.4
COL5A3P25940 MEP1AP1-201ENST00000636082 1097 ntBASIC17.52■□□□□ 0.4
COL5A3P25940 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
COL5A3P25940 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 CICP24-201ENST00000605464 2705 ntBASIC17.52■□□□□ 0.4
COL5A3P25940 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.52■□□□□ 0.4
COL5A3P25940 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.52■□□□□ 0.4
COL5A3P25940 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
COL5A3P25940 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.52■□□□□ 0.4
COL5A3P25940 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL5A3P25940 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
COL5A3P25940 AL513477.1-201ENST00000602865 2407 ntBASIC17.52■□□□□ 0.4
COL5A3P25940 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A3P25940 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A3P25940 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC17.52■□□□□ 0.39
COL5A3P25940 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC17.52■□□□□ 0.39
COL5A3P25940 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.52■□□□□ 0.39
COL5A3P25940 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC17.52■□□□□ 0.39
COL5A3P25940 AC007279.1-201ENST00000448547 837 ntBASIC17.52■□□□□ 0.39
COL5A3P25940 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC17.52■□□□□ 0.39
COL5A3P25940 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC17.52■□□□□ 0.39
COL5A3P25940 RPL29P2-201ENST00000488409 460 ntBASIC17.52■□□□□ 0.39
COL5A3P25940 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC17.52■□□□□ 0.39
COL5A3P25940 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC17.52■□□□□ 0.39
COL5A3P25940 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC17.52■□□□□ 0.39
COL5A3P25940 AP000920.1-201ENST00000531824 344 ntBASIC17.52■□□□□ 0.39
COL5A3P25940 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC17.52■□□□□ 0.39
COL5A3P25940 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A3P25940 RN7SL605P-201ENST00000577229 281 ntBASIC17.52■□□□□ 0.39
COL5A3P25940 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC17.52■□□□□ 0.39
COL5A3P25940 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A3P25940 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A3P25940 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A3P25940 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A3P25940 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A3P25940 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL5A3P25940 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC17.51■□□□□ 0.39
COL5A3P25940 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC17.51■□□□□ 0.39
COL5A3P25940 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL5A3P25940 HSPA7-201ENST00000445535 1927 ntBASIC17.51■□□□□ 0.39
COL5A3P25940 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.51■□□□□ 0.39
COL5A3P25940 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
COL5A3P25940 MIR611-201ENST00000384869 67 ntBASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms