Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 SSR4-202ENST00000370085 526 ntTSL 2 BASIC6.23□□□□□ -1.41
USH2AO75445 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC6.23□□□□□ -1.41
USH2AO75445 DDX11L8-201ENST00000535849 366 ntBASIC6.23□□□□□ -1.41
USH2AO75445 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC6.23□□□□□ -1.41
USH2AO75445 HERC2P5-202ENST00000564458 1164 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 HERC2P8-203ENST00000564795 1164 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC6.23□□□□□ -1.41
USH2AO75445 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
USH2AO75445 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC6.23□□□□□ -1.41
USH2AO75445 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 AC073869.1-201ENST00000415574 2762 ntBASIC6.23□□□□□ -1.41
USH2AO75445 AC015909.5-201ENST00000624336 2266 ntBASIC6.23□□□□□ -1.41
USH2AO75445 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC6.23□□□□□ -1.41
USH2AO75445 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 PLAC9P1-203ENST00000440031 223 ntBASIC6.23□□□□□ -1.41
USH2AO75445 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC6.23□□□□□ -1.41
USH2AO75445 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 PNLIPRP2-201ENST00000579578 1482 ntAPPRIS P5 TSL 2 BASIC6.23□□□□□ -1.41
USH2AO75445 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
USH2AO75445 AC093462.1-201ENST00000621167 1683 ntBASIC6.23□□□□□ -1.41
USH2AO75445 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC6.23□□□□□ -1.41
USH2AO75445 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC6.23□□□□□ -1.41
USH2AO75445 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
USH2AO75445 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 ZEB1-AS1-208ENST00000607166 2503 ntBASIC6.22□□□□□ -1.41
USH2AO75445 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
USH2AO75445 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
USH2AO75445 DNM1P50-201ENST00000565767 508 ntBASIC6.22□□□□□ -1.41
USH2AO75445 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC6.22□□□□□ -1.41
USH2AO75445 PTMAP5-202ENST00000607242 1162 ntBASIC6.22□□□□□ -1.41
USH2AO75445 AC007274.3-201ENST00000619838 385 ntBASIC6.22□□□□□ -1.41
USH2AO75445 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC6.22□□□□□ -1.41
USH2AO75445 MEP1AP1-201ENST00000636082 1097 ntBASIC6.22□□□□□ -1.41
USH2AO75445 AC245369.8-201ENST00000636589 306 ntBASIC6.22□□□□□ -1.41
USH2AO75445 LINC00115-201ENST00000473798 1317 ntBASIC6.22□□□□□ -1.41
USH2AO75445 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC6.22□□□□□ -1.41
USH2AO75445 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
USH2AO75445 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
USH2AO75445 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
USH2AO75445 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC6.22□□□□□ -1.41
USH2AO75445 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
USH2AO75445 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 IGLV2-33-201ENST00000390302 412 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
USH2AO75445 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 LINC00337-201ENST00000429480 1302 ntTSL 2 BASIC6.22□□□□□ -1.41
USH2AO75445 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC6.22□□□□□ -1.41
USH2AO75445 RN7SL22P-201ENST00000471800 269 ntBASIC6.22□□□□□ -1.41
USH2AO75445 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC6.22□□□□□ -1.41
USH2AO75445 MNAT1-202ENST00000539616 1220 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC6.22□□□□□ -1.41
USH2AO75445 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC6.22□□□□□ -1.41
USH2AO75445 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC6.22□□□□□ -1.41
USH2AO75445 PDLIM2-218ENST00000614502 599 ntTSL 2 BASIC6.22□□□□□ -1.41
USH2AO75445 AL139260.3-204ENST00000621281 609 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
USH2AO75445 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC6.22□□□□□ -1.41
USH2AO75445 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC6.22□□□□□ -1.41
USH2AO75445 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
USH2AO75445 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC6.22□□□□□ -1.41
USH2AO75445 GPI-205ENST00000586425 1799 ntTSL 5 BASIC6.22□□□□□ -1.41
USH2AO75445 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC6.22□□□□□ -1.41
USH2AO75445 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms