Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC17.79■□□□□ 0.44
CACNA1FO60840 OR2W2P-201ENST00000406313 909 ntBASIC17.79■□□□□ 0.44
CACNA1FO60840 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 HNRNPA1P2-207ENST00000432375 960 ntBASIC17.79■□□□□ 0.44
CACNA1FO60840 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 AC092638.2-201ENST00000441105 947 ntBASIC17.79■□□□□ 0.44
CACNA1FO60840 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC17.79■□□□□ 0.44
CACNA1FO60840 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC17.79■□□□□ 0.44
CACNA1FO60840 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC17.79■□□□□ 0.44
CACNA1FO60840 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
CACNA1FO60840 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CACNA1FO60840 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CACNA1FO60840 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CACNA1FO60840 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 AC111170.3-201ENST00000624282 2464 ntBASIC17.78■□□□□ 0.44
CACNA1FO60840 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC17.78■□□□□ 0.44
CACNA1FO60840 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
CACNA1FO60840 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC17.78■□□□□ 0.44
CACNA1FO60840 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CACNA1FO60840 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CACNA1FO60840 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
CACNA1FO60840 NCLP1-201ENST00000445357 1963 ntBASIC17.78■□□□□ 0.44
CACNA1FO60840 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC17.78■□□□□ 0.44
CACNA1FO60840 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CACNA1FO60840 RCC2P5-201ENST00000492126 1487 ntBASIC17.78■□□□□ 0.44
CACNA1FO60840 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 AC132812.1-201ENST00000583145 892 ntBASIC17.78■□□□□ 0.44
CACNA1FO60840 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
CACNA1FO60840 AC091769.1-201ENST00000619576 568 ntBASIC17.78■□□□□ 0.44
CACNA1FO60840 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC17.78■□□□□ 0.44
CACNA1FO60840 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CACNA1FO60840 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CACNA1FO60840 DDC-204ENST00000426377 1700 ntTSL 3 BASIC17.77■□□□□ 0.44
CACNA1FO60840 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC17.77■□□□□ 0.44
CACNA1FO60840 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC17.77■□□□□ 0.44
CACNA1FO60840 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
CACNA1FO60840 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC17.77■□□□□ 0.44
CACNA1FO60840 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC17.77■□□□□ 0.44
CACNA1FO60840 OR5BD1P-201ENST00000532527 817 ntBASIC17.77■□□□□ 0.44
CACNA1FO60840 IQSEC3P1-201ENST00000538799 536 ntBASIC17.77■□□□□ 0.44
CACNA1FO60840 CR383656.3-201ENST00000551315 183 ntBASIC17.77■□□□□ 0.44
CACNA1FO60840 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC17.77■□□□□ 0.44
CACNA1FO60840 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CACNA1FO60840 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CACNA1FO60840 MIR4706-201ENST00000582134 82 ntBASIC17.77■□□□□ 0.44
CACNA1FO60840 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC17.77■□□□□ 0.44
CACNA1FO60840 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC17.77■□□□□ 0.44
CACNA1FO60840 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CACNA1FO60840 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
CACNA1FO60840 AC093462.1-201ENST00000621167 1683 ntBASIC17.77■□□□□ 0.44
CACNA1FO60840 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CACNA1FO60840 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CACNA1FO60840 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CACNA1FO60840 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CACNA1FO60840 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CACNA1FO60840 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CACNA1FO60840 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.77■□□□□ 0.43
CACNA1FO60840 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CACNA1FO60840 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CACNA1FO60840 AL357563.1-201ENST00000404728 395 ntBASIC17.77■□□□□ 0.43
CACNA1FO60840 MIR1307-201ENST00000408840 149 ntBASIC17.77■□□□□ 0.43
CACNA1FO60840 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC17.77■□□□□ 0.43
CACNA1FO60840 CTBP2P4-201ENST00000513884 920 ntBASIC17.77■□□□□ 0.43
CACNA1FO60840 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CACNA1FO60840 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
CACNA1FO60840 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.77■□□□□ 0.43
CACNA1FO60840 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC17.77■□□□□ 0.43
CACNA1FO60840 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC17.77■□□□□ 0.43
CACNA1FO60840 ST5-261ENST00000626808 1071 ntTSL 5 BASIC17.77■□□□□ 0.43
CACNA1FO60840 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CACNA1FO60840 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
CACNA1FO60840 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms