Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC11.88□□□□□ -0.51
SSSCA1O60232 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC11.88□□□□□ -0.51
SSSCA1O60232 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
SSSCA1O60232 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
SSSCA1O60232 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC11.88□□□□□ -0.51
SSSCA1O60232 CR383656.2-201ENST00000548656 2254 ntBASIC11.88□□□□□ -0.51
SSSCA1O60232 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
SSSCA1O60232 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC11.88□□□□□ -0.51
SSSCA1O60232 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC11.88□□□□□ -0.51
SSSCA1O60232 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC11.88□□□□□ -0.51
SSSCA1O60232 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC11.88□□□□□ -0.51
SSSCA1O60232 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC11.88□□□□□ -0.51
SSSCA1O60232 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC11.88□□□□□ -0.51
SSSCA1O60232 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 TNRC18P1-201ENST00000502875 3650 ntBASIC11.88□□□□□ -0.51
SSSCA1O60232 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
SSSCA1O60232 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC11.88□□□□□ -0.51
SSSCA1O60232 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
SSSCA1O60232 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC11.88□□□□□ -0.51
SSSCA1O60232 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC11.88□□□□□ -0.51
SSSCA1O60232 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
SSSCA1O60232 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SSSCA1O60232 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC11.88□□□□□ -0.51
SSSCA1O60232 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC11.87□□□□□ -0.51
SSSCA1O60232 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
SSSCA1O60232 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
SSSCA1O60232 PCDHA6-201ENST00000378126 3267 ntBASIC11.87□□□□□ -0.51
SSSCA1O60232 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 KHSRPP1-201ENST00000427983 1768 ntBASIC11.87□□□□□ -0.51
SSSCA1O60232 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
SSSCA1O60232 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
SSSCA1O60232 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
SSSCA1O60232 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC11.87□□□□□ -0.51
SSSCA1O60232 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC11.87□□□□□ -0.51
SSSCA1O60232 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
SSSCA1O60232 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 TEX30-205ENST00000376029 959 ntTSL 2 BASIC11.87□□□□□ -0.51
SSSCA1O60232 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC11.87□□□□□ -0.51
SSSCA1O60232 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 MEIS3P1-201ENST00000495167 958 ntBASIC11.87□□□□□ -0.51
SSSCA1O60232 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC11.87□□□□□ -0.51
SSSCA1O60232 PGAM5P1-201ENST00000518923 814 ntBASIC11.87□□□□□ -0.51
SSSCA1O60232 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC11.87□□□□□ -0.51
SSSCA1O60232 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC11.87□□□□□ -0.51
SSSCA1O60232 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
SSSCA1O60232 AC131206.1-201ENST00000538078 1211 ntBASIC11.87□□□□□ -0.51
SSSCA1O60232 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
SSSCA1O60232 SORD2P-201ENST00000558556 1069 ntBASIC11.87□□□□□ -0.51
SSSCA1O60232 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
SSSCA1O60232 AC092337.1-201ENST00000568699 1129 ntBASIC11.87□□□□□ -0.51
SSSCA1O60232 AC036164.1-201ENST00000570544 333 ntBASIC11.87□□□□□ -0.51
SSSCA1O60232 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC11.87□□□□□ -0.51
SSSCA1O60232 COQ4-205ENST00000609948 956 ntTSL 2 BASIC11.87□□□□□ -0.51
SSSCA1O60232 AP002761.4-201ENST00000565433 3361 ntBASIC11.87□□□□□ -0.51
SSSCA1O60232 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 AGAP12P-201ENST00000585227 2359 ntBASIC11.87□□□□□ -0.51
SSSCA1O60232 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC11.87□□□□□ -0.51
SSSCA1O60232 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
SSSCA1O60232 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC11.87□□□□□ -0.51
SSSCA1O60232 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
SSSCA1O60232 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SSSCA1O60232 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms