Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 FKBP4P6-201ENST00000457486 1332 ntBASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AC064801.2-201ENST00000625052 1303 ntBASIC11.78□□□□□ -0.52
FOXA2Q9Y261 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AC020910.5-201ENST00000623668 1865 ntBASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 MAPT-IT1-201ENST00000624111 3016 ntBASIC11.78□□□□□ -0.52
FOXA2Q9Y261 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC11.78□□□□□ -0.52
FOXA2Q9Y261 AC005252.3-201ENST00000623855 2258 ntBASIC11.77□□□□□ -0.52
FOXA2Q9Y261 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
FOXA2Q9Y261 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 AC079776.1-201ENST00000401540 1152 ntBASIC11.77□□□□□ -0.53
FOXA2Q9Y261 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 CTBP2P5-201ENST00000454986 1264 ntBASIC11.77□□□□□ -0.53
FOXA2Q9Y261 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 HILS1-202ENST00000545329 423 ntBASIC11.77□□□□□ -0.53
FOXA2Q9Y261 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 AC017083.2-201ENST00000608069 979 ntBASIC11.77□□□□□ -0.53
FOXA2Q9Y261 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 RPS24-214ENST00000613865 538 ntTSL 5 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 MIR6805-201ENST00000615055 62 ntBASIC11.77□□□□□ -0.53
FOXA2Q9Y261 AC006453.4-201ENST00000636949 1252 ntBASIC11.77□□□□□ -0.53
FOXA2Q9Y261 MVK-217ENST00000639206 367 ntTSL 5 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 ANKRD30BP2-201ENST00000435744 1610 ntBASIC11.77□□□□□ -0.53
FOXA2Q9Y261 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 DMBT1P1-203ENST00000636837 4628 ntBASIC11.77□□□□□ -0.53
FOXA2Q9Y261 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 AP000593.2-201ENST00000542775 1433 ntBASIC11.77□□□□□ -0.53
FOXA2Q9Y261 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
FOXA2Q9Y261 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
FOXA2Q9Y261 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms