Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PPP1R2P4-201ENST00000424051 595 ntBASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 F11R-204ENST00000537746 1245 ntTSL 2 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 AC068831.5-201ENST00000557387 328 ntBASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 AL109809.1-201ENST00000418979 1367 ntBASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 CICP24-201ENST00000605464 2705 ntBASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 ELP5-212ENST00000574255 671 ntTSL 2 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 AL929302.1-201ENST00000426556 871 ntBASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 RN7SL582P-201ENST00000491078 279 ntBASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 DRG2-220ENST00000583355 891 ntTSL 3 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 AC011462.4-201ENST00000616866 449 ntBASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 ST5-261ENST00000626808 1071 ntTSL 5 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC27.12■■□□□ 1.93
SHROOM4Q9ULL8 MYB-242ENST00000618728 3545 ntTSL 5 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 API5-208ENST00000531273 1868 ntTSL 2 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 BPIFB5P-201ENST00000457066 1099 ntBASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 CHCHD2P2-201ENST00000503744 321 ntBASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 FOXN3-AS2-201ENST00000554071 1262 ntBASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 GSN-209ENST00000449733 2702 ntTSL 2 BASIC27.11■■□□□ 1.93
SHROOM4Q9ULL8 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 AP001267.2-201ENST00000532619 2086 ntBASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 OR51A9P-201ENST00000422578 911 ntBASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 BCRP4-201ENST00000506079 804 ntBASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 AC022447.6-201ENST00000515522 438 ntBASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 AC008972.2-201ENST00000606587 494 ntBASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC27.1■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms