Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 AL357143.1-203ENST00000639750 881 ntBASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 SNU13-204ENST00000402458 462 ntTSL 3 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 RN7SL523P-201ENST00000484401 298 ntBASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 AC004801.1-201ENST00000549557 360 ntBASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 KRT8P30-201ENST00000432100 650 ntBASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 RHOQP2-201ENST00000449922 579 ntBASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 CCND3P2-201ENST00000579393 537 ntBASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 RN7SL134P-201ENST00000579756 303 ntBASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SHANK3Q9BYB0 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 HNRNPA1P56-201ENST00000505767 954 ntBASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 MIR2278-201ENST00000516344 96 ntBASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 AL050341.2-201ENST00000567508 1541 ntBASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SHANK3Q9BYB0 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC18.02■□□□□ 0.47
SHANK3Q9BYB0 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHANK3Q9BYB0 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHANK3Q9BYB0 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SHANK3Q9BYB0 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHANK3Q9BYB0 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SHANK3Q9BYB0 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC18.02■□□□□ 0.47
SHANK3Q9BYB0 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 VENTXP4-201ENST00000449029 958 ntBASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AC004923.3-201ENST00000527532 355 ntBASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 MIR4254-201ENST00000581063 76 ntBASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms