Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA3Q99758 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA3Q99758 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC18.45■□□□□ 0.54
ABCA3Q99758 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
ABCA3Q99758 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA3Q99758 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA3Q99758 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC18.45■□□□□ 0.54
ABCA3Q99758 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA3Q99758 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA3Q99758 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC18.45■□□□□ 0.54
ABCA3Q99758 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC18.45■□□□□ 0.54
ABCA3Q99758 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC18.45■□□□□ 0.54
ABCA3Q99758 PHBP18-201ENST00000546648 813 ntBASIC18.45■□□□□ 0.54
ABCA3Q99758 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC18.45■□□□□ 0.54
ABCA3Q99758 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC18.45■□□□□ 0.54
ABCA3Q99758 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC18.45■□□□□ 0.54
ABCA3Q99758 AL137028.2-201ENST00000614601 256 ntBASIC18.45■□□□□ 0.54
ABCA3Q99758 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA3Q99758 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA3Q99758 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA3Q99758 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ABCA3Q99758 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
ABCA3Q99758 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
ABCA3Q99758 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
ABCA3Q99758 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
ABCA3Q99758 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
ABCA3Q99758 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.44■□□□□ 0.54
ABCA3Q99758 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 RPL4P6-201ENST00000438116 1304 ntBASIC18.44■□□□□ 0.54
ABCA3Q99758 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
ABCA3Q99758 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC18.44■□□□□ 0.54
ABCA3Q99758 RBMXP1-201ENST00000408004 1191 ntBASIC18.44■□□□□ 0.54
ABCA3Q99758 AC113398.1-201ENST00000464124 406 ntBASIC18.44■□□□□ 0.54
ABCA3Q99758 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC18.44■□□□□ 0.54
ABCA3Q99758 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
ABCA3Q99758 AC023051.2-201ENST00000541141 460 ntBASIC18.44■□□□□ 0.54
ABCA3Q99758 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC18.44■□□□□ 0.54
ABCA3Q99758 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 LINC00967-203ENST00000518035 1502 ntTSL 2 BASIC18.44■□□□□ 0.54
ABCA3Q99758 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
ABCA3Q99758 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC18.44■□□□□ 0.54
ABCA3Q99758 AL121753.2-201ENST00000624581 1461 ntBASIC18.44■□□□□ 0.54
ABCA3Q99758 AL031590.1-202ENST00000641466 1737 ntBASIC18.44■□□□□ 0.54
ABCA3Q99758 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
ABCA3Q99758 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.44■□□□□ 0.54
ABCA3Q99758 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
ABCA3Q99758 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC18.44■□□□□ 0.54
ABCA3Q99758 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
ABCA3Q99758 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC18.43■□□□□ 0.54
ABCA3Q99758 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC18.43■□□□□ 0.54
ABCA3Q99758 RFNG-202ENST00000429557 994 ntTSL 5 BASIC18.43■□□□□ 0.54
ABCA3Q99758 YBX1P3-201ENST00000468366 909 ntBASIC18.43■□□□□ 0.54
ABCA3Q99758 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC18.43■□□□□ 0.54
ABCA3Q99758 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
ABCA3Q99758 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC18.43■□□□□ 0.54
ABCA3Q99758 OR3A1-202ENST00000615105 966 ntBASIC18.43■□□□□ 0.54
ABCA3Q99758 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.43■□□□□ 0.54
ABCA3Q99758 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
ABCA3Q99758 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
ABCA3Q99758 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
ABCA3Q99758 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
ABCA3Q99758 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC18.43■□□□□ 0.54
ABCA3Q99758 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.43■□□□□ 0.54
ABCA3Q99758 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
ABCA3Q99758 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC18.43■□□□□ 0.54
ABCA3Q99758 CRIP1P2-201ENST00000425396 228 ntBASIC18.43■□□□□ 0.54
ABCA3Q99758 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
ABCA3Q99758 IGHVII-74-1-201ENST00000517572 241 ntBASIC18.43■□□□□ 0.54
ABCA3Q99758 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC18.43■□□□□ 0.54
ABCA3Q99758 TPST2P1-201ENST00000564073 1102 ntBASIC18.43■□□□□ 0.54
ABCA3Q99758 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
ABCA3Q99758 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC18.43■□□□□ 0.54
ABCA3Q99758 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
ABCA3Q99758 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms