Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 HNRNPA1P63-201ENST00000427917 963 ntBASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 AC114501.1-201ENST00000445949 172 ntBASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.73□□□□□ -0.05
SHROOM3Q8TF72 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 NORAD-201ENST00000565493 5339 ntBASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 AHCYP4-201ENST00000419201 1315 ntBASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 AC234644.1-201ENST00000406065 370 ntBASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 AL359881.3-201ENST00000602640 1721 ntBASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SHROOM3Q8TF72 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 RPL18P13-201ENST00000478088 569 ntBASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 AC140658.4-201ENST00000561990 352 ntBASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 AC020914.3-201ENST00000594712 304 ntBASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 AL451050.2-201ENST00000606967 682 ntBASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 AC138649.2-201ENST00000615886 705 ntBASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms