Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 FNTAP2-201ENST00000430308 634 ntBASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 EIF4HP1-201ENST00000453115 687 ntBASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 AKR7A2P1-201ENST00000460134 915 ntBASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 RCC2P8-201ENST00000502779 1035 ntBASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 AC140658.4-201ENST00000561990 352 ntBASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 MST1P2-201ENST00000457982 2291 ntBASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 AC138028.6-201ENST00000616106 1482 ntBASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.78□□□□□ -0.36
ZIC4Q8N9L1 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
ZIC4Q8N9L1 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC12.77□□□□□ -0.36
ZIC4Q8N9L1 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC12.77□□□□□ -0.36
ZIC4Q8N9L1 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
ZIC4Q8N9L1 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
ZIC4Q8N9L1 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC12.77□□□□□ -0.36
ZIC4Q8N9L1 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC12.77□□□□□ -0.36
ZIC4Q8N9L1 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 SDCCAG3P2-201ENST00000326105 1023 ntBASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 SLC16A6P1-201ENST00000413214 1059 ntBASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 NAT9-222ENST00000583476 583 ntTSL 3 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 AC020914.3-201ENST00000594712 304 ntBASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 AC244452.3-201ENST00000636814 210 ntBASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
ZIC4Q8N9L1 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ZIC4Q8N9L1 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
ZIC4Q8N9L1 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
ZIC4Q8N9L1 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ZIC4Q8N9L1 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
ZIC4Q8N9L1 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
ZIC4Q8N9L1 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
ZIC4Q8N9L1 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12.76□□□□□ -0.37
ZIC4Q8N9L1 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
ZIC4Q8N9L1 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms