Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
VPS13DQ5THJ4 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
VPS13DQ5THJ4 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
VPS13DQ5THJ4 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC9.36□□□□□ -0.91
VPS13DQ5THJ4 AC092810.2-201ENST00000431570 362 ntBASIC9.36□□□□□ -0.91
VPS13DQ5THJ4 NDUFB2P1-201ENST00000506966 295 ntBASIC9.36□□□□□ -0.91
VPS13DQ5THJ4 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC9.36□□□□□ -0.91
VPS13DQ5THJ4 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC9.36□□□□□ -0.91
VPS13DQ5THJ4 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
VPS13DQ5THJ4 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
VPS13DQ5THJ4 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 MIR1307-201ENST00000408840 149 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 HNRNPA3P6-201ENST00000472163 1006 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 DPY19L2P4-201ENST00000479881 442 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 AP000920.1-201ENST00000531824 344 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 NF1P11-201ENST00000621292 1282 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 AC005865.2-202ENST00000635814 725 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 DDC-204ENST00000426377 1700 ntTSL 3 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 CRIP1P2-201ENST00000425396 228 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 ALG1L15P-201ENST00000482834 794 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 GGNBP1-204ENST00000613113 887 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 FGD5P1-202ENST00000614866 2498 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 CICP24-201ENST00000605464 2705 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 NRADDP-202ENST00000641269 1585 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 MARK2P17-201ENST00000498560 841 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 AC144831.1-201ENST00000573312 2656 ntBASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC9.35□□□□□ -0.91
VPS13DQ5THJ4 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 CASP2-203ENST00000392925 616 ntTSL 3 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 CSTP2-201ENST00000610599 398 ntBASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 AL356000.1-201ENST00000441073 1238 ntBASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 COQ10BP2-201ENST00000513804 724 ntBASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC9.34□□□□□ -0.91
VPS13DQ5THJ4 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms