Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 AC232323.1-201ENST00000540724 2099 ntBASIC14.01□□□□□ -0.17
COL28A1Q2UY09 REXO1L5P-201ENST00000622260 2098 ntBASIC14.01□□□□□ -0.17
COL28A1Q2UY09 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 REXO1L4P-201ENST00000605109 1937 ntBASIC14.01□□□□□ -0.17
COL28A1Q2UY09 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.01□□□□□ -0.17
COL28A1Q2UY09 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14□□□□□ -0.17
COL28A1Q2UY09 AC012508.2-201ENST00000567613 1472 ntBASIC14□□□□□ -0.17
COL28A1Q2UY09 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14□□□□□ -0.17
COL28A1Q2UY09 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 WASH3P-207ENST00000560956 1394 ntBASIC14□□□□□ -0.17
COL28A1Q2UY09 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14□□□□□ -0.17
COL28A1Q2UY09 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14□□□□□ -0.17
COL28A1Q2UY09 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14□□□□□ -0.17
COL28A1Q2UY09 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14□□□□□ -0.17
COL28A1Q2UY09 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 CHCHD2P9-201ENST00000461726 456 ntBASIC14□□□□□ -0.17
COL28A1Q2UY09 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC14□□□□□ -0.17
COL28A1Q2UY09 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14□□□□□ -0.17
COL28A1Q2UY09 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14□□□□□ -0.17
COL28A1Q2UY09 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14□□□□□ -0.17
COL28A1Q2UY09 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14□□□□□ -0.17
COL28A1Q2UY09 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
COL28A1Q2UY09 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14□□□□□ -0.17
COL28A1Q2UY09 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
COL28A1Q2UY09 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
COL28A1Q2UY09 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14□□□□□ -0.17
COL28A1Q2UY09 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14□□□□□ -0.17
COL28A1Q2UY09 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
COL28A1Q2UY09 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14□□□□□ -0.17
COL28A1Q2UY09 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL28A1Q2UY09 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AC090502.4-201ENST00000551714 1386 ntBASIC13.99□□□□□ -0.17
COL28A1Q2UY09 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 UROS-201ENST00000368774 744 ntTSL 2 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 KRT17P4-201ENST00000429445 819 ntBASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AL627422.1-201ENST00000434104 580 ntBASIC13.99□□□□□ -0.17
COL28A1Q2UY09 SERBP1P2-201ENST00000436888 1164 ntBASIC13.99□□□□□ -0.17
COL28A1Q2UY09 BRI3P1-201ENST00000440440 378 ntBASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 HLA-J-204ENST00000495278 958 ntBASIC13.99□□□□□ -0.17
COL28A1Q2UY09 SCARNA21-201ENST00000517026 139 ntBASIC13.99□□□□□ -0.17
COL28A1Q2UY09 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AC138466.3-201ENST00000619983 221 ntBASIC13.99□□□□□ -0.17
COL28A1Q2UY09 MIR6816-201ENST00000620368 66 ntBASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL28A1Q2UY09 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms