Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
PCDH1Q08174 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCDH1Q08174 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCDH1Q08174 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
PCDH1Q08174 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCDH1Q08174 AC079781.5-202ENST00000641784 3743 ntBASIC14.02□□□□□ -0.16
PCDH1Q08174 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCDH1Q08174 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PCDH1Q08174 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
PCDH1Q08174 CICP16-201ENST00000502609 2813 ntBASIC14.02□□□□□ -0.16
PCDH1Q08174 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.02□□□□□ -0.16
PCDH1Q08174 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCDH1Q08174 MBLAC2-202ENST00000514906 1936 ntBASIC14.02□□□□□ -0.16
PCDH1Q08174 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.02□□□□□ -0.16
PCDH1Q08174 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PCDH1Q08174 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PCDH1Q08174 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
PCDH1Q08174 AC244394.1-201ENST00000435000 1665 ntBASIC14.02□□□□□ -0.16
PCDH1Q08174 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCDH1Q08174 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
PCDH1Q08174 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
PCDH1Q08174 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCDH1Q08174 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
PCDH1Q08174 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
PCDH1Q08174 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCDH1Q08174 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.02□□□□□ -0.17
PCDH1Q08174 AL354877.1-201ENST00000424412 413 ntBASIC14.02□□□□□ -0.17
PCDH1Q08174 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.02□□□□□ -0.17
PCDH1Q08174 GPR53P-205ENST00000457298 1084 ntBASIC14.02□□□□□ -0.17
PCDH1Q08174 AC104989.1-201ENST00000519711 778 ntBASIC14.02□□□□□ -0.17
PCDH1Q08174 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.02□□□□□ -0.17
PCDH1Q08174 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.02□□□□□ -0.17
PCDH1Q08174 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PCDH1Q08174 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCDH1Q08174 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PCDH1Q08174 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.02□□□□□ -0.17
PCDH1Q08174 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
PCDH1Q08174 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCDH1Q08174 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
PCDH1Q08174 AL022313.4-201ENST00000562756 2046 ntBASIC14.02□□□□□ -0.17
PCDH1Q08174 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
PCDH1Q08174 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
PCDH1Q08174 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 AC015656.1-201ENST00000624209 3578 ntBASIC14.01□□□□□ -0.17
PCDH1Q08174 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC14.01□□□□□ -0.17
PCDH1Q08174 AC244107.1-201ENST00000442033 332 ntBASIC14.01□□□□□ -0.17
PCDH1Q08174 AC012441.2-201ENST00000444843 739 ntBASIC14.01□□□□□ -0.17
PCDH1Q08174 CSF2RBP1-201ENST00000447905 391 ntBASIC14.01□□□□□ -0.17
PCDH1Q08174 ACA64.2-201ENST00000459014 129 ntBASIC14.01□□□□□ -0.17
PCDH1Q08174 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC14.01□□□□□ -0.17
PCDH1Q08174 HNRNPA1P36-201ENST00000521313 955 ntBASIC14.01□□□□□ -0.17
PCDH1Q08174 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.01□□□□□ -0.17
PCDH1Q08174 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.01□□□□□ -0.17
PCDH1Q08174 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 AP005482.1-201ENST00000563722 1273 ntBASIC14.01□□□□□ -0.17
PCDH1Q08174 AC132872.1-201ENST00000566986 1195 ntBASIC14.01□□□□□ -0.17
PCDH1Q08174 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.01□□□□□ -0.17
PCDH1Q08174 AL162426.1-201ENST00000624141 743 ntBASIC14.01□□□□□ -0.17
PCDH1Q08174 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.01□□□□□ -0.17
PCDH1Q08174 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
PCDH1Q08174 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
PCDH1Q08174 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.01□□□□□ -0.17
PCDH1Q08174 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.01□□□□□ -0.17
PCDH1Q08174 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 AC010327.5-201ENST00000586923 3061 ntBASIC14.01□□□□□ -0.17
PCDH1Q08174 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
PCDH1Q08174 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
PCDH1Q08174 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms