Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
GABPAQ06546 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
GABPAQ06546 AL512306.1-201ENST00000432698 848 ntBASIC16.85■□□□□ 0.29
GABPAQ06546 AC253536.4-201ENST00000440539 267 ntBASIC16.85■□□□□ 0.29
GABPAQ06546 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
GABPAQ06546 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.85■□□□□ 0.29
GABPAQ06546 RPL18AP3-201ENST00000462885 528 ntBASIC16.85■□□□□ 0.29
GABPAQ06546 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC16.85■□□□□ 0.29
GABPAQ06546 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC16.85■□□□□ 0.29
GABPAQ06546 AC135983.4-201ENST00000564116 1262 ntBASIC16.85■□□□□ 0.29
GABPAQ06546 RN7SL665P-201ENST00000578793 300 ntBASIC16.85■□□□□ 0.29
GABPAQ06546 AL133467.4-201ENST00000602953 725 ntBASIC16.85■□□□□ 0.29
GABPAQ06546 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
GABPAQ06546 AL022313.4-201ENST00000562756 2046 ntBASIC16.85■□□□□ 0.29
GABPAQ06546 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.85■□□□□ 0.29
GABPAQ06546 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
GABPAQ06546 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.85■□□□□ 0.29
GABPAQ06546 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
GABPAQ06546 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
GABPAQ06546 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC16.85■□□□□ 0.29
GABPAQ06546 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
GABPAQ06546 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
GABPAQ06546 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
GABPAQ06546 AC097359.2-201ENST00000604992 2389 ntBASIC16.85■□□□□ 0.29
GABPAQ06546 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
GABPAQ06546 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
GABPAQ06546 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
GABPAQ06546 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
GABPAQ06546 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
GABPAQ06546 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.84■□□□□ 0.29
GABPAQ06546 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 HLA-DMA-203ENST00000395305 777 ntBASIC16.84■□□□□ 0.29
GABPAQ06546 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC16.84■□□□□ 0.29
GABPAQ06546 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC16.84■□□□□ 0.29
GABPAQ06546 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC16.84■□□□□ 0.29
GABPAQ06546 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC16.84■□□□□ 0.29
GABPAQ06546 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 MT3-203ENST00000565838 421 ntTSL 3 BASIC16.84■□□□□ 0.29
GABPAQ06546 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC16.84■□□□□ 0.29
GABPAQ06546 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC16.84■□□□□ 0.29
GABPAQ06546 MIR7845-201ENST00000618396 99 ntBASIC16.84■□□□□ 0.29
GABPAQ06546 SHMT1P1-201ENST00000419974 1312 ntBASIC16.84■□□□□ 0.29
GABPAQ06546 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC16.84■□□□□ 0.29
GABPAQ06546 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
GABPAQ06546 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC16.84■□□□□ 0.29
GABPAQ06546 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.84■□□□□ 0.29
GABPAQ06546 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC16.84■□□□□ 0.29
GABPAQ06546 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
GABPAQ06546 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
GABPAQ06546 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.84■□□□□ 0.29
GABPAQ06546 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
GABPAQ06546 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.84■□□□□ 0.29
GABPAQ06546 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
GABPAQ06546 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
GABPAQ06546 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
GABPAQ06546 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
GABPAQ06546 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
GABPAQ06546 NORAD-201ENST00000565493 5339 ntBASIC16.83■□□□□ 0.29
GABPAQ06546 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC16.83■□□□□ 0.28
GABPAQ06546 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.83■□□□□ 0.28
GABPAQ06546 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
GABPAQ06546 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC16.83■□□□□ 0.28
GABPAQ06546 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.83■□□□□ 0.28
GABPAQ06546 LDHBP1-201ENST00000455730 1119 ntBASIC16.83■□□□□ 0.28
GABPAQ06546 AC095040.1-201ENST00000513286 675 ntBASIC16.83■□□□□ 0.28
GABPAQ06546 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC16.83■□□□□ 0.28
GABPAQ06546 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC16.83■□□□□ 0.28
GABPAQ06546 NEU3-207ENST00000534628 746 ntTSL 2 BASIC16.83■□□□□ 0.28
GABPAQ06546 AL512310.5-201ENST00000551999 515 ntBASIC16.83■□□□□ 0.28
GABPAQ06546 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC16.83■□□□□ 0.28
GABPAQ06546 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
GABPAQ06546 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC16.83■□□□□ 0.28
GABPAQ06546 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.28
GABPAQ06546 RN7SL736P-201ENST00000613111 269 ntBASIC16.83■□□□□ 0.28
GABPAQ06546 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GABPAQ06546 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms