Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC104506.1-201ENST00000609247 429 ntBASIC15.19■□□□□ 0.02
HDAC4P56524 AL096828.3-201ENST00000615354 462 ntBASIC15.19■□□□□ 0.02
HDAC4P56524 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.19■□□□□ 0.02
HDAC4P56524 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
HDAC4P56524 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC15.19■□□□□ 0.02
HDAC4P56524 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.19■□□□□ 0.02
HDAC4P56524 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
HDAC4P56524 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
HDAC4P56524 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 ARHGAP23P1-201ENST00000562773 1937 ntBASIC15.19■□□□□ 0.02
HDAC4P56524 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15.19■□□□□ 0.02
HDAC4P56524 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.19■□□□□ 0.02
HDAC4P56524 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.19■□□□□ 0.02
HDAC4P56524 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.19■□□□□ 0.02
HDAC4P56524 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HDAC4P56524 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.19■□□□□ 0.02
HDAC4P56524 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.18■□□□□ 0.02
HDAC4P56524 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC15.18■□□□□ 0.02
HDAC4P56524 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.18■□□□□ 0.02
HDAC4P56524 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
HDAC4P56524 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
HDAC4P56524 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
HDAC4P56524 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.18■□□□□ 0.02
HDAC4P56524 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
HDAC4P56524 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
HDAC4P56524 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.18■□□□□ 0.02
HDAC4P56524 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.18■□□□□ 0.02
HDAC4P56524 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
HDAC4P56524 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC15.18■□□□□ 0.02
HDAC4P56524 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.18■□□□□ 0.02
HDAC4P56524 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.18■□□□□ 0.02
HDAC4P56524 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.18■□□□□ 0.02
HDAC4P56524 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC15.18■□□□□ 0.02
HDAC4P56524 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.18■□□□□ 0.02
HDAC4P56524 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
HDAC4P56524 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.18■□□□□ 0.02
HDAC4P56524 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
HDAC4P56524 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HDAC4P56524 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.17■□□□□ 0.02
HDAC4P56524 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
HDAC4P56524 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
HDAC4P56524 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.17■□□□□ 0.02
HDAC4P56524 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
HDAC4P56524 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
HDAC4P56524 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.17■□□□□ 0.02
HDAC4P56524 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC15.17■□□□□ 0.02
HDAC4P56524 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.17■□□□□ 0.02
HDAC4P56524 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.17■□□□□ 0.02
HDAC4P56524 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.17■□□□□ 0.02
HDAC4P56524 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.17■□□□□ 0.02
HDAC4P56524 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.17■□□□□ 0.02
HDAC4P56524 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.17■□□□□ 0.02
HDAC4P56524 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HDAC4P56524 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.17■□□□□ 0.02
HDAC4P56524 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.17■□□□□ 0.02
HDAC4P56524 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC15.17■□□□□ 0.02
HDAC4P56524 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.17■□□□□ 0.02
HDAC4P56524 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
HDAC4P56524 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HDAC4P56524 REXO1L6P-201ENST00000603433 1515 ntBASIC15.17■□□□□ 0.02
HDAC4P56524 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
HDAC4P56524 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms