Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NUP98P52948 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NUP98P52948 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
NUP98P52948 FKBP4P8-201ENST00000610931 1369 ntBASIC17.54■□□□□ 0.4
NUP98P52948 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NUP98P52948 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NUP98P52948 MIR1307-201ENST00000408840 149 ntBASIC17.54■□□□□ 0.4
NUP98P52948 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC17.54■□□□□ 0.4
NUP98P52948 RPL3P5-201ENST00000441645 1232 ntBASIC17.54■□□□□ 0.4
NUP98P52948 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC17.54■□□□□ 0.4
NUP98P52948 GULOP-201ENST00000454030 748 ntBASIC17.54■□□□□ 0.4
NUP98P52948 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
NUP98P52948 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC17.54■□□□□ 0.4
NUP98P52948 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC17.54■□□□□ 0.4
NUP98P52948 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC17.54■□□□□ 0.4
NUP98P52948 PEBP1P2-201ENST00000603980 558 ntBASIC17.54■□□□□ 0.4
NUP98P52948 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC17.54■□□□□ 0.4
NUP98P52948 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
NUP98P52948 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
NUP98P52948 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC17.53■□□□□ 0.4
NUP98P52948 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 TUBB4AP1-201ENST00000450755 1325 ntBASIC17.53■□□□□ 0.4
NUP98P52948 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 RCC2P1-201ENST00000452257 1476 ntBASIC17.53■□□□□ 0.4
NUP98P52948 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.53■□□□□ 0.4
NUP98P52948 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
NUP98P52948 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC17.53■□□□□ 0.4
NUP98P52948 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 AC092903.1-201ENST00000466506 262 ntBASIC17.53■□□□□ 0.4
NUP98P52948 RN7SL596P-201ENST00000582123 288 ntBASIC17.53■□□□□ 0.4
NUP98P52948 AC026120.2-201ENST00000617239 309 ntBASIC17.53■□□□□ 0.4
NUP98P52948 AC005274.1-201ENST00000623460 802 ntBASIC17.53■□□□□ 0.4
NUP98P52948 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.53■□□□□ 0.4
NUP98P52948 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.53■□□□□ 0.4
NUP98P52948 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.53■□□□□ 0.4
NUP98P52948 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC17.53■□□□□ 0.4
NUP98P52948 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.53■□□□□ 0.4
NUP98P52948 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
NUP98P52948 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
NUP98P52948 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.53■□□□□ 0.4
NUP98P52948 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 LINC00552-201ENST00000625151 2579 ntBASIC17.52■□□□□ 0.4
NUP98P52948 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.4
NUP98P52948 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC17.52■□□□□ 0.4
NUP98P52948 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC17.52■□□□□ 0.4
NUP98P52948 RN7SL128P-201ENST00000467883 305 ntBASIC17.52■□□□□ 0.4
NUP98P52948 AC083801.1-201ENST00000491689 358 ntBASIC17.52■□□□□ 0.4
NUP98P52948 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC17.52■□□□□ 0.4
NUP98P52948 AC090136.2-201ENST00000517809 420 ntBASIC17.52■□□□□ 0.4
NUP98P52948 AC027139.1-201ENST00000565286 951 ntBASIC17.52■□□□□ 0.4
NUP98P52948 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NUP98P52948 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC17.52■□□□□ 0.4
NUP98P52948 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
NUP98P52948 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
NUP98P52948 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
NUP98P52948 PHB-210ENST00000511832 1509 ntTSL 2 BASIC17.52■□□□□ 0.39
NUP98P52948 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
NUP98P52948 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
NUP98P52948 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
NUP98P52948 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
NUP98P52948 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
NUP98P52948 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.52■□□□□ 0.39
NUP98P52948 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC17.52■□□□□ 0.39
NUP98P52948 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NUP98P52948 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NUP98P52948 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NUP98P52948 HLA-DMA-202ENST00000395303 1007 ntBASIC17.51■□□□□ 0.39
NUP98P52948 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
NUP98P52948 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC17.51■□□□□ 0.39
NUP98P52948 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NUP98P52948 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NUP98P52948 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC17.51■□□□□ 0.39
NUP98P52948 AC126755.5-201ENST00000622756 267 ntBASIC17.51■□□□□ 0.39
NUP98P52948 AC026336.4-201ENST00000624565 1050 ntBASIC17.51■□□□□ 0.39
NUP98P52948 AP000769.1-203ENST00000637245 208 ntBASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms