Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
HOXC12P31275 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 LINC00528-201ENST00000600723 2160 ntBASIC12.97□□□□□ -0.33
HOXC12P31275 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 AC090114.2-201ENST00000608477 7054 ntBASIC12.97□□□□□ -0.33
HOXC12P31275 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXC12P31275 AC009093.2-202ENST00000620513 2079 ntBASIC12.97□□□□□ -0.33
HOXC12P31275 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXC12P31275 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 SDCCAG3P2-201ENST00000326105 1023 ntBASIC12.97□□□□□ -0.33
HOXC12P31275 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
HOXC12P31275 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 RPL17P11-201ENST00000417593 544 ntBASIC12.97□□□□□ -0.33
HOXC12P31275 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC12.97□□□□□ -0.33
HOXC12P31275 CHMP1AP1-201ENST00000445563 662 ntBASIC12.97□□□□□ -0.33
HOXC12P31275 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 SPTLC1P5-201ENST00000450718 252 ntBASIC12.97□□□□□ -0.33
HOXC12P31275 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXC12P31275 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 SUPT4H1P2-201ENST00000501248 353 ntBASIC12.97□□□□□ -0.33
HOXC12P31275 AC044849.1-201ENST00000519737 1188 ntBASIC12.97□□□□□ -0.33
HOXC12P31275 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXC12P31275 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXC12P31275 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC12.97□□□□□ -0.33
HOXC12P31275 AL358472.3-201ENST00000608147 415 ntBASIC12.97□□□□□ -0.33
HOXC12P31275 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
HOXC12P31275 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
HOXC12P31275 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
HOXC12P31275 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXC12P31275 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
HOXC12P31275 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXC12P31275 CICP23-201ENST00000605013 2741 ntBASIC12.97□□□□□ -0.33
HOXC12P31275 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
HOXC12P31275 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
HOXC12P31275 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
HOXC12P31275 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
HOXC12P31275 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.96□□□□□ -0.33
HOXC12P31275 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.96□□□□□ -0.33
HOXC12P31275 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 TUBBP5-203ENST00000508529 1334 ntBASIC12.96□□□□□ -0.33
HOXC12P31275 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC12.96□□□□□ -0.33
HOXC12P31275 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC12.96□□□□□ -0.33
HOXC12P31275 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXC12P31275 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms