Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A5P29400 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A5P29400 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A5P29400 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 CICP14-201ENST00000629111 2732 ntBASIC16.8■□□□□ 0.28
COL4A5P29400 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.8■□□□□ 0.28
COL4A5P29400 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.8■□□□□ 0.28
COL4A5P29400 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC16.8■□□□□ 0.28
COL4A5P29400 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
COL4A5P29400 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.8■□□□□ 0.28
COL4A5P29400 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC16.8■□□□□ 0.28
COL4A5P29400 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 GH1-203ENST00000351388 685 ntTSL 2 BASIC16.8■□□□□ 0.28
COL4A5P29400 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 CCL19-202ENST00000378800 414 ntTSL 2 BASIC16.8■□□□□ 0.28
COL4A5P29400 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
COL4A5P29400 MPV17-209ENST00000405983 859 ntTSL 5 BASIC16.8■□□□□ 0.28
COL4A5P29400 AL773545.2-201ENST00000442149 472 ntBASIC16.8■□□□□ 0.28
COL4A5P29400 AC108724.1-201ENST00000481669 352 ntBASIC16.8■□□□□ 0.28
COL4A5P29400 RN7SL523P-201ENST00000484401 298 ntBASIC16.8■□□□□ 0.28
COL4A5P29400 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC16.8■□□□□ 0.28
COL4A5P29400 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC16.8■□□□□ 0.28
COL4A5P29400 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC16.8■□□□□ 0.28
COL4A5P29400 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
COL4A5P29400 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 AC064850.1-201ENST00000413279 1398 ntBASIC16.8■□□□□ 0.28
COL4A5P29400 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
COL4A5P29400 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
COL4A5P29400 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.8■□□□□ 0.28
COL4A5P29400 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC16.8■□□□□ 0.28
COL4A5P29400 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.8■□□□□ 0.28
COL4A5P29400 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC16.79■□□□□ 0.28
COL4A5P29400 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC16.79■□□□□ 0.28
COL4A5P29400 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
COL4A5P29400 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
COL4A5P29400 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC16.79■□□□□ 0.28
COL4A5P29400 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 AIG1-203ENST00000367596 559 ntTSL 2 BASIC16.79■□□□□ 0.28
COL4A5P29400 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC16.79■□□□□ 0.28
COL4A5P29400 KRT18P33-201ENST00000398525 1043 ntBASIC16.79■□□□□ 0.28
COL4A5P29400 AC079250.1-201ENST00000456046 531 ntBASIC16.79■□□□□ 0.28
COL4A5P29400 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC16.79■□□□□ 0.28
COL4A5P29400 CCND3P2-201ENST00000579393 537 ntBASIC16.79■□□□□ 0.28
COL4A5P29400 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC16.79■□□□□ 0.28
COL4A5P29400 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC16.79■□□□□ 0.28
COL4A5P29400 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.79■□□□□ 0.28
COL4A5P29400 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.79■□□□□ 0.28
COL4A5P29400 AC090505.1-201ENST00000430515 1834 ntBASIC16.79■□□□□ 0.28
COL4A5P29400 AC022532.1-201ENST00000624563 1728 ntBASIC16.79■□□□□ 0.28
COL4A5P29400 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.79■□□□□ 0.28
COL4A5P29400 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.79■□□□□ 0.28
COL4A5P29400 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
COL4A5P29400 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL4A5P29400 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC16.78■□□□□ 0.28
COL4A5P29400 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 IGKV1OR-2-201ENST00000457995 350 ntBASIC16.78■□□□□ 0.28
COL4A5P29400 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC16.78■□□□□ 0.28
COL4A5P29400 MBP-230ENST00000528160 584 ntTSL 5 BASIC16.78■□□□□ 0.28
COL4A5P29400 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 RN7SL524P-201ENST00000581152 300 ntBASIC16.78■□□□□ 0.28
COL4A5P29400 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
COL4A5P29400 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC16.78■□□□□ 0.28
COL4A5P29400 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
COL4A5P29400 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms