Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC16.51■□□□□ 0.23
SMARCA1P28370 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC16.51■□□□□ 0.23
SMARCA1P28370 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SMARCA1P28370 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC16.51■□□□□ 0.23
SMARCA1P28370 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
SMARCA1P28370 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SMARCA1P28370 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.51■□□□□ 0.23
SMARCA1P28370 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.51■□□□□ 0.23
SMARCA1P28370 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC16.51■□□□□ 0.23
SMARCA1P28370 PTPA-217ENST00000434095 870 ntTSL 2 BASIC16.51■□□□□ 0.23
SMARCA1P28370 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC16.51■□□□□ 0.23
SMARCA1P28370 RN7SL769P-201ENST00000469386 295 ntBASIC16.51■□□□□ 0.23
SMARCA1P28370 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.51■□□□□ 0.23
SMARCA1P28370 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.51■□□□□ 0.23
SMARCA1P28370 CHCHD2P2-201ENST00000503744 321 ntBASIC16.51■□□□□ 0.23
SMARCA1P28370 AC008723.1-201ENST00000506922 207 ntBASIC16.51■□□□□ 0.23
SMARCA1P28370 AC245884.6-201ENST00000515672 1067 ntBASIC16.51■□□□□ 0.23
SMARCA1P28370 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC16.51■□□□□ 0.23
SMARCA1P28370 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC16.51■□□□□ 0.23
SMARCA1P28370 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.51■□□□□ 0.23
SMARCA1P28370 BAP1-211ENST00000615113 489 ntBASIC16.51■□□□□ 0.23
SMARCA1P28370 AC079336.7-201ENST00000623428 1078 ntBASIC16.51■□□□□ 0.23
SMARCA1P28370 AC006453.1-201ENST00000636037 1257 ntBASIC16.51■□□□□ 0.23
SMARCA1P28370 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.51■□□□□ 0.23
SMARCA1P28370 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.51■□□□□ 0.23
SMARCA1P28370 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.51■□□□□ 0.23
SMARCA1P28370 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC16.51■□□□□ 0.23
SMARCA1P28370 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.51■□□□□ 0.23
SMARCA1P28370 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SMARCA1P28370 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 KRT18P9-201ENST00000604826 1300 ntBASIC16.5■□□□□ 0.23
SMARCA1P28370 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 KRT17P5-201ENST00000332088 839 ntBASIC16.5■□□□□ 0.23
SMARCA1P28370 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 OR8T1P-201ENST00000421347 918 ntBASIC16.5■□□□□ 0.23
SMARCA1P28370 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.5■□□□□ 0.23
SMARCA1P28370 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC16.5■□□□□ 0.23
SMARCA1P28370 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.5■□□□□ 0.23
SMARCA1P28370 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.5■□□□□ 0.23
SMARCA1P28370 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.5■□□□□ 0.23
SMARCA1P28370 AL109837.1-201ENST00000603272 613 ntBASIC16.5■□□□□ 0.23
SMARCA1P28370 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC16.5■□□□□ 0.23
SMARCA1P28370 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SMARCA1P28370 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SMARCA1P28370 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SMARCA1P28370 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.5■□□□□ 0.23
SMARCA1P28370 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SMARCA1P28370 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SMARCA1P28370 DDC-213ENST00000617822 1809 ntTSL 3 BASIC16.49■□□□□ 0.23
SMARCA1P28370 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SMARCA1P28370 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.49■□□□□ 0.23
SMARCA1P28370 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SMARCA1P28370 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SMARCA1P28370 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SMARCA1P28370 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
SMARCA1P28370 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.49■□□□□ 0.23
SMARCA1P28370 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SMARCA1P28370 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SMARCA1P28370 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SMARCA1P28370 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC16.49■□□□□ 0.23
SMARCA1P28370 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
SMARCA1P28370 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SMARCA1P28370 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SMARCA1P28370 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
SMARCA1P28370 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC16.49■□□□□ 0.23
SMARCA1P28370 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC16.49■□□□□ 0.23
SMARCA1P28370 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SMARCA1P28370 DUTP3-201ENST00000450025 415 ntBASIC16.49■□□□□ 0.23
SMARCA1P28370 RN7SL720P-201ENST00000488178 304 ntBASIC16.49■□□□□ 0.23
SMARCA1P28370 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.49■□□□□ 0.23
SMARCA1P28370 CD164-210ENST00000512821 964 ntTSL 2 BASIC16.49■□□□□ 0.23
SMARCA1P28370 RTN3P1-201ENST00000536295 711 ntBASIC16.49■□□□□ 0.23
SMARCA1P28370 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SMARCA1P28370 AC009560.1-201ENST00000620208 434 ntBASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms