Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC005962.1-201ENST00000584100 773 ntBASIC17.11■□□□□ 0.33
HMGB1P09429 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 AC005324.6-201ENST00000587972 613 ntBASIC17.11■□□□□ 0.33
HMGB1P09429 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HMGB1P09429 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGB1P09429 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
HMGB1P09429 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB1P09429 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HMGB1P09429 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB1P09429 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB1P09429 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB1P09429 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB1P09429 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HMGB1P09429 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGB1P09429 AL365209.1-201ENST00000624418 6473 ntBASIC17.1■□□□□ 0.33
HMGB1P09429 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HMGB1P09429 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HMGB1P09429 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB1P09429 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HMGB1P09429 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HMGB1P09429 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HMGB1P09429 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
HMGB1P09429 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.1■□□□□ 0.33
HMGB1P09429 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 RN7SL560P-201ENST00000577943 264 ntBASIC17.1■□□□□ 0.33
HMGB1P09429 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGB1P09429 AL591471.1-201ENST00000621855 229 ntBASIC17.1■□□□□ 0.33
HMGB1P09429 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 AHCYP4-201ENST00000419201 1315 ntBASIC17.1■□□□□ 0.33
HMGB1P09429 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 KRT8P29-201ENST00000420409 1371 ntBASIC17.1■□□□□ 0.33
HMGB1P09429 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
HMGB1P09429 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HMGB1P09429 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGB1P09429 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
HMGB1P09429 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB1P09429 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB1P09429 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HMGB1P09429 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGB1P09429 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB1P09429 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 BTBD6P1-201ENST00000412176 1267 ntBASIC17.09■□□□□ 0.33
HMGB1P09429 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB1P09429 AC022217.1-201ENST00000521069 738 ntBASIC17.09■□□□□ 0.33
HMGB1P09429 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGB1P09429 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB1P09429 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGB1P09429 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGB1P09429 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB1P09429 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC17.09■□□□□ 0.33
HMGB1P09429 AC009542.2-202ENST00000619004 1067 ntBASIC17.09■□□□□ 0.33
HMGB1P09429 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 CYP4F23P-201ENST00000593402 1579 ntBASIC17.09■□□□□ 0.33
HMGB1P09429 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGB1P09429 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB1P09429 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGB1P09429 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB1P09429 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB1P09429 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HMGB1P09429 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms