Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SLC28A1O00337 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.01□□□□□ -0.17
SLC28A1O00337 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.01□□□□□ -0.17
SLC28A1O00337 AL590640.2-201ENST00000457038 527 ntBASIC14.01□□□□□ -0.17
SLC28A1O00337 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.01□□□□□ -0.17
SLC28A1O00337 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.01□□□□□ -0.17
SLC28A1O00337 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
SLC28A1O00337 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.01□□□□□ -0.17
SLC28A1O00337 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.01□□□□□ -0.17
SLC28A1O00337 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.01□□□□□ -0.17
SLC28A1O00337 RN7SL713P-201ENST00000582127 302 ntBASIC14.01□□□□□ -0.17
SLC28A1O00337 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.01□□□□□ -0.17
SLC28A1O00337 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SLC28A1O00337 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SLC28A1O00337 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SLC28A1O00337 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
SLC28A1O00337 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SLC28A1O00337 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.01□□□□□ -0.17
SLC28A1O00337 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
SLC28A1O00337 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SLC28A1O00337 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SLC28A1O00337 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
SLC28A1O00337 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
SLC28A1O00337 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SLC28A1O00337 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.01□□□□□ -0.17
SLC28A1O00337 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SLC28A1O00337 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14□□□□□ -0.17
SLC28A1O00337 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
SLC28A1O00337 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14□□□□□ -0.17
SLC28A1O00337 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
SLC28A1O00337 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14□□□□□ -0.17
SLC28A1O00337 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 AL136309.1-201ENST00000403917 691 ntBASIC14□□□□□ -0.17
SLC28A1O00337 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
SLC28A1O00337 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14□□□□□ -0.17
SLC28A1O00337 FAM197Y7-201ENST00000432892 766 ntBASIC14□□□□□ -0.17
SLC28A1O00337 AC016694.1-201ENST00000434179 700 ntBASIC14□□□□□ -0.17
SLC28A1O00337 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14□□□□□ -0.17
SLC28A1O00337 BCRP2-202ENST00000447763 634 ntBASIC14□□□□□ -0.17
SLC28A1O00337 RN7SL837P-201ENST00000463010 287 ntBASIC14□□□□□ -0.17
SLC28A1O00337 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 COX5BP1-201ENST00000507622 393 ntBASIC14□□□□□ -0.17
SLC28A1O00337 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14□□□□□ -0.17
SLC28A1O00337 BCRP6-201ENST00000510112 632 ntBASIC14□□□□□ -0.17
SLC28A1O00337 BCRP7-201ENST00000511549 544 ntBASIC14□□□□□ -0.17
SLC28A1O00337 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14□□□□□ -0.17
SLC28A1O00337 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
SLC28A1O00337 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14□□□□□ -0.17
SLC28A1O00337 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14□□□□□ -0.17
SLC28A1O00337 AC027307.3-201ENST00000594262 1100 ntBASIC14□□□□□ -0.17
SLC28A1O00337 AL022328.1-201ENST00000610050 478 ntBASIC14□□□□□ -0.17
SLC28A1O00337 AC006453.4-201ENST00000636949 1252 ntBASIC14□□□□□ -0.17
SLC28A1O00337 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
SLC28A1O00337 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SLC28A1O00337 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14□□□□□ -0.17
SLC28A1O00337 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 AL354989.2-201ENST00000435838 1540 ntBASIC14□□□□□ -0.17
SLC28A1O00337 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14□□□□□ -0.17
SLC28A1O00337 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SLC28A1O00337 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 AL137784.3-201ENST00000623858 2288 ntBASIC13.99□□□□□ -0.17
SLC28A1O00337 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.99□□□□□ -0.17
SLC28A1O00337 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.99□□□□□ -0.17
SLC28A1O00337 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.99□□□□□ -0.17
SLC28A1O00337 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.99□□□□□ -0.17
SLC28A1O00337 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SLC28A1O00337 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SLC28A1O00337 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms