Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CHMP1AQ9HD42 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP1AQ9HD42 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.36■□□□□ 0.69
CHMP1AQ9HD42 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
CHMP1AQ9HD42 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC19.36■□□□□ 0.69
CHMP1AQ9HD42 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.36■□□□□ 0.69
CHMP1AQ9HD42 AL592293.1-201ENST00000502889 1188 ntBASIC19.36■□□□□ 0.69
CHMP1AQ9HD42 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CHMP1AQ9HD42 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CHMP1AQ9HD42 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP1AQ9HD42 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.36■□□□□ 0.69
CHMP1AQ9HD42 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 AC090877.2-201ENST00000558441 1738 ntBASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP1AQ9HD42 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.34■□□□□ 0.69
CHMP1AQ9HD42 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.33■□□□□ 0.69
CHMP1AQ9HD42 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.33■□□□□ 0.69
CHMP1AQ9HD42 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
CHMP1AQ9HD42 AL592295.1-201ENST00000400984 884 ntBASIC19.33■□□□□ 0.68
CHMP1AQ9HD42 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.33■□□□□ 0.68
CHMP1AQ9HD42 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP1AQ9HD42 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP1AQ9HD42 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP1AQ9HD42 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
CHMP1AQ9HD42 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP1AQ9HD42 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC19.33■□□□□ 0.68
CHMP1AQ9HD42 LINC00565-201ENST00000562710 2331 ntBASIC19.33■□□□□ 0.68
CHMP1AQ9HD42 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHMP1AQ9HD42 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 MIR6765-201ENST00000614092 87 ntBASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP1AQ9HD42 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP1AQ9HD42 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CHMP1AQ9HD42 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP1AQ9HD42 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP1AQ9HD42 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP1AQ9HD42 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP1AQ9HD42 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.31■□□□□ 0.68
CHMP1AQ9HD42 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP1AQ9HD42 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP1AQ9HD42 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CHMP1AQ9HD42 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP1AQ9HD42 AC233723.2-201ENST00000623798 2106 ntBASIC19.3■□□□□ 0.68
CHMP1AQ9HD42 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.3■□□□□ 0.68
CHMP1AQ9HD42 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.3■□□□□ 0.68
CHMP1AQ9HD42 SPCS2P3-201ENST00000500401 656 ntBASIC19.3■□□□□ 0.68
CHMP1AQ9HD42 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.3■□□□□ 0.68
CHMP1AQ9HD42 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.3■□□□□ 0.68
CHMP1AQ9HD42 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP1AQ9HD42 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP1AQ9HD42 EP400NL-214ENST00000641289 2402 ntBASIC19.3■□□□□ 0.68
CHMP1AQ9HD42 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP1AQ9HD42 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms