Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
VPS52Q8N1B4 MIR4767-201ENST00000582827 78 ntBASIC24.52■■□□□ 1.52
VPS52Q8N1B4 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC24.51■■□□□ 1.51
VPS52Q8N1B4 AC142381.3-201ENST00000568208 1670 ntBASIC24.51■■□□□ 1.51
VPS52Q8N1B4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
VPS52Q8N1B4 AC099791.2-201ENST00000605725 427 ntBASIC24.51■■□□□ 1.51
VPS52Q8N1B4 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
VPS52Q8N1B4 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC24.51■■□□□ 1.51
VPS52Q8N1B4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC24.51■■□□□ 1.51
VPS52Q8N1B4 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
VPS52Q8N1B4 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
VPS52Q8N1B4 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
VPS52Q8N1B4 SERBP1P1-201ENST00000396021 1160 ntBASIC24.5■■□□□ 1.51
VPS52Q8N1B4 PTMA-205ENST00000410064 814 ntTSL 2 BASIC24.5■■□□□ 1.51
VPS52Q8N1B4 AC091305.1-201ENST00000479476 895 ntBASIC24.5■■□□□ 1.51
VPS52Q8N1B4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
VPS52Q8N1B4 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC24.5■■□□□ 1.51
VPS52Q8N1B4 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC24.5■■□□□ 1.51
VPS52Q8N1B4 STOX2-205ENST00000513034 807 ntTSL 3 BASIC24.49■■□□□ 1.51
VPS52Q8N1B4 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
VPS52Q8N1B4 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC24.49■■□□□ 1.51
VPS52Q8N1B4 MIR5787-201ENST00000611784 55 ntBASIC24.49■■□□□ 1.51
VPS52Q8N1B4 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC24.49■■□□□ 1.51
VPS52Q8N1B4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
VPS52Q8N1B4 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC24.49■■□□□ 1.51
VPS52Q8N1B4 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
VPS52Q8N1B4 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS52Q8N1B4 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
VPS52Q8N1B4 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
VPS52Q8N1B4 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
VPS52Q8N1B4 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS52Q8N1B4 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS52Q8N1B4 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC24.48■■□□□ 1.51
VPS52Q8N1B4 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS52Q8N1B4 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
VPS52Q8N1B4 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC24.48■■□□□ 1.51
VPS52Q8N1B4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
VPS52Q8N1B4 AC022211.4-201ENST00000625094 2161 ntBASIC24.48■■□□□ 1.51
VPS52Q8N1B4 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.47■■□□□ 1.51
VPS52Q8N1B4 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
VPS52Q8N1B4 AC093323.1-202ENST00000635031 2045 ntBASIC24.47■■□□□ 1.51
VPS52Q8N1B4 AL022069.1-201ENST00000568025 1636 ntBASIC24.47■■□□□ 1.51
VPS52Q8N1B4 AC009102.2-201ENST00000606772 1639 ntBASIC24.47■■□□□ 1.51
VPS52Q8N1B4 RBM38-205ENST00000440234 686 ntTSL 2 BASIC24.47■■□□□ 1.51
VPS52Q8N1B4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC24.47■■□□□ 1.51
VPS52Q8N1B4 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC24.47■■□□□ 1.51
VPS52Q8N1B4 MIR6089-201ENST00000616698 64 ntBASIC24.47■■□□□ 1.51
VPS52Q8N1B4 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.47■■□□□ 1.51
VPS52Q8N1B4 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
VPS52Q8N1B4 PTCHD3P2-201ENST00000424937 1205 ntBASIC24.46■■□□□ 1.51
VPS52Q8N1B4 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
VPS52Q8N1B4 MAG-206ENST00000597035 542 ntTSL 4 BASIC24.46■■□□□ 1.51
VPS52Q8N1B4 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
VPS52Q8N1B4 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC24.46■■□□□ 1.51
VPS52Q8N1B4 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
VPS52Q8N1B4 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
VPS52Q8N1B4 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
VPS52Q8N1B4 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
VPS52Q8N1B4 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
VPS52Q8N1B4 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
VPS52Q8N1B4 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
VPS52Q8N1B4 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
VPS52Q8N1B4 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
VPS52Q8N1B4 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
VPS52Q8N1B4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
VPS52Q8N1B4 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
VPS52Q8N1B4 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
VPS52Q8N1B4 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.44■■□□□ 1.5
VPS52Q8N1B4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
VPS52Q8N1B4 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC24.43■■□□□ 1.5
VPS52Q8N1B4 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
VPS52Q8N1B4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
VPS52Q8N1B4 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS52Q8N1B4 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC24.42■■□□□ 1.5
VPS52Q8N1B4 CA15P2-201ENST00000611168 834 ntBASIC24.42■■□□□ 1.5
VPS52Q8N1B4 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS52Q8N1B4 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC24.42■■□□□ 1.5
VPS52Q8N1B4 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
VPS52Q8N1B4 RASA4CP-201ENST00000424092 1398 ntBASIC24.42■■□□□ 1.5
VPS52Q8N1B4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
VPS52Q8N1B4 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS52Q8N1B4 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC24.41■■□□□ 1.5
VPS52Q8N1B4 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC24.41■■□□□ 1.5
VPS52Q8N1B4 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.41■■□□□ 1.5
VPS52Q8N1B4 AL138724.1-201ENST00000606771 1088 ntBASIC24.41■■□□□ 1.5
VPS52Q8N1B4 AC011298.3-201ENST00000615796 283 ntBASIC24.41■■□□□ 1.5
VPS52Q8N1B4 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS52Q8N1B4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
VPS52Q8N1B4 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
VPS52Q8N1B4 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
VPS52Q8N1B4 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.4■■□□□ 1.5
VPS52Q8N1B4 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC24.4■■□□□ 1.5
VPS52Q8N1B4 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
VPS52Q8N1B4 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC24.4■■□□□ 1.5
VPS52Q8N1B4 AC027682.1-201ENST00000562846 899 ntBASIC24.4■■□□□ 1.5
VPS52Q8N1B4 AC104564.3-201ENST00000582367 638 ntBASIC24.4■■□□□ 1.5
VPS52Q8N1B4 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC24.4■■□□□ 1.5
VPS52Q8N1B4 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC24.4■■□□□ 1.5
VPS52Q8N1B4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC24.4■■□□□ 1.5
VPS52Q8N1B4 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms