Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC58Q4VC31 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CCDC58Q4VC31 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC58Q4VC31 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC58Q4VC31 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC58Q4VC31 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC58Q4VC31 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.14■□□□□ 0.82
CCDC58Q4VC31 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.14■□□□□ 0.81
CCDC58Q4VC31 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC58Q4VC31 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC58Q4VC31 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.13■□□□□ 0.81
CCDC58Q4VC31 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC58Q4VC31 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC58Q4VC31 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC58Q4VC31 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.13■□□□□ 0.81
CCDC58Q4VC31 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.13■□□□□ 0.81
CCDC58Q4VC31 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC58Q4VC31 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC58Q4VC31 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CCDC58Q4VC31 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CCDC58Q4VC31 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC58Q4VC31 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC58Q4VC31 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC58Q4VC31 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CCDC58Q4VC31 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC58Q4VC31 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC58Q4VC31 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.11■□□□□ 0.81
CCDC58Q4VC31 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.11■□□□□ 0.81
CCDC58Q4VC31 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CCDC58Q4VC31 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC58Q4VC31 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC58Q4VC31 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CCDC58Q4VC31 RPS2P7-201ENST00000447334 885 ntBASIC20.09■□□□□ 0.81
CCDC58Q4VC31 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC58Q4VC31 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC58Q4VC31 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC58Q4VC31 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC58Q4VC31 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
CCDC58Q4VC31 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
CCDC58Q4VC31 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.81
CCDC58Q4VC31 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC58Q4VC31 AL592295.1-201ENST00000400984 884 ntBASIC20.08■□□□□ 0.81
CCDC58Q4VC31 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CCDC58Q4VC31 MIR7108-201ENST00000614319 87 ntBASIC20.08■□□□□ 0.81
CCDC58Q4VC31 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC58Q4VC31 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC58Q4VC31 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.08■□□□□ 0.8
CCDC58Q4VC31 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.08■□□□□ 0.8
CCDC58Q4VC31 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CCDC58Q4VC31 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms