Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
ZNF404Q494X3 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF404Q494X3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF404Q494X3 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF404Q494X3 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF404Q494X3 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF404Q494X3 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
ZNF404Q494X3 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF404Q494X3 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
ZNF404Q494X3 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.44■□□□□ 0.86
ZNF404Q494X3 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.44■□□□□ 0.86
ZNF404Q494X3 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.44■□□□□ 0.86
ZNF404Q494X3 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.44■□□□□ 0.86
ZNF404Q494X3 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC20.44■□□□□ 0.86
ZNF404Q494X3 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF404Q494X3 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF404Q494X3 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF404Q494X3 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ZNF404Q494X3 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
ZNF404Q494X3 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
ZNF404Q494X3 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.44■□□□□ 0.86
ZNF404Q494X3 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF404Q494X3 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF404Q494X3 AC009831.1-201ENST00000580420 1582 ntBASIC20.43■□□□□ 0.86
ZNF404Q494X3 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF404Q494X3 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF404Q494X3 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF404Q494X3 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.43■□□□□ 0.86
ZNF404Q494X3 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF404Q494X3 AC133552.2-201ENST00000619106 1032 ntBASIC20.43■□□□□ 0.86
ZNF404Q494X3 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF404Q494X3 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.43■□□□□ 0.86
ZNF404Q494X3 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF404Q494X3 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZNF404Q494X3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF404Q494X3 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.42■□□□□ 0.86
ZNF404Q494X3 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF404Q494X3 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
ZNF404Q494X3 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF404Q494X3 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF404Q494X3 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF404Q494X3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF404Q494X3 ANOS2P-203ENST00000472227 1816 ntBASIC20.42■□□□□ 0.86
ZNF404Q494X3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
ZNF404Q494X3 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC20.42■□□□□ 0.86
ZNF404Q494X3 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF404Q494X3 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF404Q494X3 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZNF404Q494X3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.42■□□□□ 0.86
ZNF404Q494X3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
ZNF404Q494X3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF404Q494X3 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
ZNF404Q494X3 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF404Q494X3 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF404Q494X3 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.41■□□□□ 0.86
ZNF404Q494X3 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF404Q494X3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF404Q494X3 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
ZNF404Q494X3 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.41■□□□□ 0.86
ZNF404Q494X3 RAP2CP1-202ENST00000605179 643 ntBASIC20.41■□□□□ 0.86
ZNF404Q494X3 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF404Q494X3 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZNF404Q494X3 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF404Q494X3 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF404Q494X3 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.4■□□□□ 0.86
ZNF404Q494X3 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF404Q494X3 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF404Q494X3 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF404Q494X3 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZNF404Q494X3 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.4■□□□□ 0.86
ZNF404Q494X3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF404Q494X3 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF404Q494X3 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF404Q494X3 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
ZNF404Q494X3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.39■□□□□ 0.85
ZNF404Q494X3 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF404Q494X3 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
ZNF404Q494X3 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF404Q494X3 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF404Q494X3 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.39■□□□□ 0.85
ZNF404Q494X3 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZNF404Q494X3 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF404Q494X3 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF404Q494X3 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.38■□□□□ 0.85
ZNF404Q494X3 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF404Q494X3 KRT18P60-201ENST00000312876 1297 ntBASIC20.38■□□□□ 0.85
ZNF404Q494X3 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF404Q494X3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF404Q494X3 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.38■□□□□ 0.85
ZNF404Q494X3 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZNF404Q494X3 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
ZNF404Q494X3 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.38■□□□□ 0.85
ZNF404Q494X3 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF404Q494X3 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
ZNF404Q494X3 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.37■□□□□ 0.85
ZNF404Q494X3 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF404Q494X3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF404Q494X3 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF404Q494X3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZNF404Q494X3 AL592293.1-201ENST00000502889 1188 ntBASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms