Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
CKS1BP61024 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC15.71■□□□□ 0.11
CKS1BP61024 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CKS1BP61024 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
CKS1BP61024 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
CKS1BP61024 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CKS1BP61024 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CKS1BP61024 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
CKS1BP61024 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CKS1BP61024 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CKS1BP61024 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CKS1BP61024 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC15.7■□□□□ 0.1
CKS1BP61024 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CKS1BP61024 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CKS1BP61024 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CKS1BP61024 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CKS1BP61024 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS1BP61024 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS1BP61024 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CKS1BP61024 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CKS1BP61024 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS1BP61024 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC15.69■□□□□ 0.1
CKS1BP61024 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.69■□□□□ 0.1
CKS1BP61024 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS1BP61024 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC15.69■□□□□ 0.1
CKS1BP61024 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC15.69■□□□□ 0.1
CKS1BP61024 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CKS1BP61024 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS1BP61024 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS1BP61024 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.69■□□□□ 0.1
CKS1BP61024 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS1BP61024 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CKS1BP61024 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CKS1BP61024 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CKS1BP61024 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC15.69■□□□□ 0.1
CKS1BP61024 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC15.69■□□□□ 0.1
CKS1BP61024 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS1BP61024 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
CKS1BP61024 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC15.69■□□□□ 0.1
CKS1BP61024 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC15.69■□□□□ 0.1
CKS1BP61024 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CKS1BP61024 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS1BP61024 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CKS1BP61024 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS1BP61024 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS1BP61024 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CKS1BP61024 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS1BP61024 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC15.68■□□□□ 0.1
CKS1BP61024 CR559946.2-201ENST00000623684 991 ntBASIC15.68■□□□□ 0.1
CKS1BP61024 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS1BP61024 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS1BP61024 AL117328.2-201ENST00000624617 1940 ntBASIC15.68■□□□□ 0.1
CKS1BP61024 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
CKS1BP61024 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS1BP61024 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS1BP61024 MIR3960-201ENST00000583311 91 ntBASIC15.67■□□□□ 0.1
CKS1BP61024 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CKS1BP61024 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CKS1BP61024 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS1BP61024 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS1BP61024 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CKS1BP61024 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS1BP61024 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
CKS1BP61024 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC15.66■□□□□ 0.1
CKS1BP61024 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC15.66■□□□□ 0.1
CKS1BP61024 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CKS1BP61024 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS1BP61024 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CKS1BP61024 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC15.66■□□□□ 0.1
CKS1BP61024 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CKS1BP61024 PFN2-211ENST00000489155 636 ntTSL 4 BASIC15.66■□□□□ 0.1
CKS1BP61024 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS1BP61024 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CKS1BP61024 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC15.66■□□□□ 0.1
CKS1BP61024 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CKS1BP61024 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS1BP61024 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC15.66■□□□□ 0.1
CKS1BP61024 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CKS1BP61024 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CKS1BP61024 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC15.65■□□□□ 0.1
CKS1BP61024 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CKS1BP61024 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
CKS1BP61024 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CKS1BP61024 STK25-234ENST00000535007 2459 ntTSL 2 BASIC15.65■□□□□ 0.1
CKS1BP61024 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 GDI1-215ENST00000630693 786 ntTSL 4 BASIC15.65■□□□□ 0.1
CKS1BP61024 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC15.65■□□□□ 0.1
CKS1BP61024 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC15.65■□□□□ 0.1
CKS1BP61024 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CKS1BP61024 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms