Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA3P55318 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
FOXA3P55318 AL137060.1-201ENST00000618151 2648 ntBASIC16.97■□□□□ 0.31
FOXA3P55318 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC16.97■□□□□ 0.31
FOXA3P55318 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC16.97■□□□□ 0.31
FOXA3P55318 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC16.97■□□□□ 0.31
FOXA3P55318 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA3P55318 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA3P55318 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA3P55318 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
FOXA3P55318 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
FOXA3P55318 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA3P55318 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA3P55318 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
FOXA3P55318 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA3P55318 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA3P55318 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA3P55318 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA3P55318 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
FOXA3P55318 SLC25A24-204ENST00000569674 2357 ntBASIC16.96■□□□□ 0.31
FOXA3P55318 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC16.96■□□□□ 0.31
FOXA3P55318 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
FOXA3P55318 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
FOXA3P55318 FOXO3B-201ENST00000395675 1928 ntBASIC16.96■□□□□ 0.3
FOXA3P55318 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC16.95■□□□□ 0.3
FOXA3P55318 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA3P55318 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA3P55318 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA3P55318 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC16.95■□□□□ 0.3
FOXA3P55318 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA3P55318 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
FOXA3P55318 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA3P55318 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA3P55318 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA3P55318 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA3P55318 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
FOXA3P55318 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
FOXA3P55318 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
FOXA3P55318 HGH1-207ENST00000628266 258 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA3P55318 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA3P55318 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA3P55318 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA3P55318 MED17-221ENST00000639724 2317 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA3P55318 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
FOXA3P55318 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA3P55318 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA3P55318 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
FOXA3P55318 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC16.94■□□□□ 0.3
FOXA3P55318 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA3P55318 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA3P55318 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA3P55318 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC16.93■□□□□ 0.3
FOXA3P55318 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA3P55318 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA3P55318 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC16.93■□□□□ 0.3
FOXA3P55318 MIR3960-201ENST00000583311 91 ntBASIC16.93■□□□□ 0.3
FOXA3P55318 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA3P55318 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
FOXA3P55318 AC242852.2-201ENST00000615738 1807 ntBASIC16.93■□□□□ 0.3
FOXA3P55318 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA3P55318 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA3P55318 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA3P55318 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
FOXA3P55318 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
FOXA3P55318 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
FOXA3P55318 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA3P55318 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
FOXA3P55318 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA3P55318 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA3P55318 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXA3P55318 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA3P55318 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA3P55318 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA3P55318 HES6-205ENST00000409356 528 ntTSL 2 BASIC16.92■□□□□ 0.3
FOXA3P55318 AC025884.2-201ENST00000553429 711 ntBASIC16.92■□□□□ 0.3
FOXA3P55318 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC16.92■□□□□ 0.3
FOXA3P55318 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA3P55318 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA3P55318 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
FOXA3P55318 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA3P55318 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
FOXA3P55318 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
FOXA3P55318 ESRRAP2-201ENST00000418437 1549 ntBASIC16.91■□□□□ 0.3
FOXA3P55318 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA3P55318 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA3P55318 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
FOXA3P55318 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA3P55318 EI24-213ENST00000618552 1747 ntTSL 5 BASIC16.91■□□□□ 0.3
FOXA3P55318 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA3P55318 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXA3P55318 AL161729.1-201ENST00000604104 1402 ntBASIC16.91■□□□□ 0.3
FOXA3P55318 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA3P55318 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC16.91■□□□□ 0.3
FOXA3P55318 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA3P55318 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA3P55318 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
FOXA3P55318 GCA-201ENST00000233612 1694 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXA3P55318 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC16.91■□□□□ 0.3
FOXA3P55318 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
FOXA3P55318 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms