Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
EPHB3P54753 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
EPHB3P54753 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
EPHB3P54753 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.84■■□□□ 1.41
EPHB3P54753 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
EPHB3P54753 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
EPHB3P54753 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
EPHB3P54753 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.84■■□□□ 1.41
EPHB3P54753 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
EPHB3P54753 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.84■■□□□ 1.41
EPHB3P54753 LGR4-203ENST00000480977 492 ntTSL 2 BASIC23.84■■□□□ 1.41
EPHB3P54753 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.84■■□□□ 1.41
EPHB3P54753 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
EPHB3P54753 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
EPHB3P54753 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
EPHB3P54753 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
EPHB3P54753 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.83■■□□□ 1.41
EPHB3P54753 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.83■■□□□ 1.41
EPHB3P54753 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
EPHB3P54753 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
EPHB3P54753 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
EPHB3P54753 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.82■■□□□ 1.4
EPHB3P54753 AC006455.2-201ENST00000429931 906 ntBASIC23.82■■□□□ 1.4
EPHB3P54753 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
EPHB3P54753 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
EPHB3P54753 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
EPHB3P54753 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.81■■□□□ 1.4
EPHB3P54753 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.81■■□□□ 1.4
EPHB3P54753 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
EPHB3P54753 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
EPHB3P54753 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
EPHB3P54753 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
EPHB3P54753 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
EPHB3P54753 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
EPHB3P54753 RASA4CP-201ENST00000424092 1398 ntBASIC23.8■■□□□ 1.4
EPHB3P54753 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
EPHB3P54753 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
EPHB3P54753 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.8■■□□□ 1.4
EPHB3P54753 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.8■■□□□ 1.4
EPHB3P54753 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.8■■□□□ 1.4
EPHB3P54753 AC027682.1-201ENST00000562846 899 ntBASIC23.8■■□□□ 1.4
EPHB3P54753 AC136469.2-201ENST00000623944 1028 ntBASIC23.8■■□□□ 1.4
EPHB3P54753 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
EPHB3P54753 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
EPHB3P54753 AC135731.1-201ENST00000569415 2548 ntBASIC23.79■■□□□ 1.4
EPHB3P54753 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
EPHB3P54753 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
EPHB3P54753 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
EPHB3P54753 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
EPHB3P54753 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.79■■□□□ 1.4
EPHB3P54753 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC23.79■■□□□ 1.4
EPHB3P54753 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
EPHB3P54753 MIR3181-201ENST00000578512 73 ntBASIC23.79■■□□□ 1.4
EPHB3P54753 AC008764.7-201ENST00000593779 1081 ntBASIC23.79■■□□□ 1.4
EPHB3P54753 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.79■■□□□ 1.4
EPHB3P54753 CA15P2-201ENST00000611168 834 ntBASIC23.79■■□□□ 1.4
EPHB3P54753 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
EPHB3P54753 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
EPHB3P54753 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.79■■□□□ 1.4
EPHB3P54753 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
EPHB3P54753 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.79■■□□□ 1.4
EPHB3P54753 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
EPHB3P54753 RARRES2P6-201ENST00000567333 442 ntBASIC23.78■■□□□ 1.4
EPHB3P54753 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
EPHB3P54753 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
EPHB3P54753 AC142381.3-201ENST00000568208 1670 ntBASIC23.78■■□□□ 1.4
EPHB3P54753 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
EPHB3P54753 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
EPHB3P54753 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
EPHB3P54753 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.77■■□□□ 1.4
EPHB3P54753 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
EPHB3P54753 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
EPHB3P54753 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
EPHB3P54753 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
EPHB3P54753 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
EPHB3P54753 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
EPHB3P54753 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
EPHB3P54753 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.76■■□□□ 1.39
EPHB3P54753 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.76■■□□□ 1.39
EPHB3P54753 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC23.76■■□□□ 1.39
EPHB3P54753 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
EPHB3P54753 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
EPHB3P54753 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
EPHB3P54753 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
EPHB3P54753 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
EPHB3P54753 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.75■■□□□ 1.39
EPHB3P54753 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.75■■□□□ 1.39
EPHB3P54753 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.75■■□□□ 1.39
EPHB3P54753 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
EPHB3P54753 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
EPHB3P54753 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.74■■□□□ 1.39
EPHB3P54753 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
EPHB3P54753 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC23.74■■□□□ 1.39
EPHB3P54753 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
EPHB3P54753 AC099791.1-201ENST00000416440 715 ntBASIC23.74■■□□□ 1.39
EPHB3P54753 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC23.74■■□□□ 1.39
EPHB3P54753 AC141586.4-201ENST00000624558 1573 ntBASIC23.74■■□□□ 1.39
EPHB3P54753 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
EPHB3P54753 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
EPHB3P54753 AC138932.3-201ENST00000567634 1902 ntBASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms