Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.88■□□□□ 0.77
CX3CR1P49238 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CX3CR1P49238 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.88■□□□□ 0.77
CX3CR1P49238 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC19.88■□□□□ 0.77
CX3CR1P49238 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19.88■□□□□ 0.77
CX3CR1P49238 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.88■□□□□ 0.77
CX3CR1P49238 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.88■□□□□ 0.77
CX3CR1P49238 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CX3CR1P49238 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CX3CR1P49238 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.88■□□□□ 0.77
CX3CR1P49238 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CX3CR1P49238 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.88■□□□□ 0.77
CX3CR1P49238 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CX3CR1P49238 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.88■□□□□ 0.77
CX3CR1P49238 ANOS2P-203ENST00000472227 1816 ntBASIC19.88■□□□□ 0.77
CX3CR1P49238 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CX3CR1P49238 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CX3CR1P49238 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.87■□□□□ 0.77
CX3CR1P49238 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
CX3CR1P49238 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CX3CR1P49238 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CX3CR1P49238 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.87■□□□□ 0.77
CX3CR1P49238 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.87■□□□□ 0.77
CX3CR1P49238 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CX3CR1P49238 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.87■□□□□ 0.77
CX3CR1P49238 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CX3CR1P49238 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CR1P49238 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CR1P49238 KRT8P33-201ENST00000508125 1423 ntBASIC19.86■□□□□ 0.77
CX3CR1P49238 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.86■□□□□ 0.77
CX3CR1P49238 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CR1P49238 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CR1P49238 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CR1P49238 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CR1P49238 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.86■□□□□ 0.77
CX3CR1P49238 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
CX3CR1P49238 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CR1P49238 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CR1P49238 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.86■□□□□ 0.77
CX3CR1P49238 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CR1P49238 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CX3CR1P49238 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CX3CR1P49238 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CX3CR1P49238 YBX1P4-201ENST00000392794 808 ntBASIC19.85■□□□□ 0.77
CX3CR1P49238 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CX3CR1P49238 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CX3CR1P49238 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CX3CR1P49238 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.84■□□□□ 0.77
CX3CR1P49238 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CX3CR1P49238 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.84■□□□□ 0.77
CX3CR1P49238 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.84■□□□□ 0.77
CX3CR1P49238 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.84■□□□□ 0.77
CX3CR1P49238 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CX3CR1P49238 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.83■□□□□ 0.77
CX3CR1P49238 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CX3CR1P49238 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
CX3CR1P49238 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CX3CR1P49238 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CX3CR1P49238 AC103834.1-201ENST00000520383 144 ntBASIC19.83■□□□□ 0.77
CX3CR1P49238 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CX3CR1P49238 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.83■□□□□ 0.76
CX3CR1P49238 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CX3CR1P49238 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.83■□□□□ 0.76
CX3CR1P49238 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CX3CR1P49238 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CX3CR1P49238 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CX3CR1P49238 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CX3CR1P49238 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.82■□□□□ 0.76
CX3CR1P49238 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.82■□□□□ 0.76
CX3CR1P49238 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.82■□□□□ 0.76
CX3CR1P49238 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CX3CR1P49238 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CX3CR1P49238 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CX3CR1P49238 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CX3CR1P49238 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CX3CR1P49238 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CX3CR1P49238 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CX3CR1P49238 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CX3CR1P49238 AC092068.2-201ENST00000590491 1708 ntBASIC19.81■□□□□ 0.76
CX3CR1P49238 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.81■□□□□ 0.76
CX3CR1P49238 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CX3CR1P49238 C9orf163-202ENST00000624034 2573 ntBASIC19.81■□□□□ 0.76
CX3CR1P49238 AC103724.3-201ENST00000564481 992 ntBASIC19.8■□□□□ 0.76
CX3CR1P49238 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CX3CR1P49238 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CX3CR1P49238 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CX3CR1P49238 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CX3CR1P49238 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CX3CR1P49238 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms