Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SOX3P41225 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SOX3P41225 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SOX3P41225 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.25■□□□□ 0.99
SOX3P41225 HLA-L-211ENST00000482052 1765 ntBASIC21.25■□□□□ 0.99
SOX3P41225 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.24■□□□□ 0.99
SOX3P41225 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SOX3P41225 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SOX3P41225 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SOX3P41225 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SOX3P41225 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SOX3P41225 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SOX3P41225 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SOX3P41225 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.24■□□□□ 0.99
SOX3P41225 AC004448.1-201ENST00000458332 883 ntBASIC21.24■□□□□ 0.99
SOX3P41225 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.24■□□□□ 0.99
SOX3P41225 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.24■□□□□ 0.99
SOX3P41225 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SOX3P41225 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.23■□□□□ 0.99
SOX3P41225 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SOX3P41225 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.23■□□□□ 0.99
SOX3P41225 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.23■□□□□ 0.99
SOX3P41225 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SOX3P41225 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SOX3P41225 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SOX3P41225 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.23■□□□□ 0.99
SOX3P41225 MIR6722-201ENST00000617286 78 ntBASIC21.23■□□□□ 0.99
SOX3P41225 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.23■□□□□ 0.99
SOX3P41225 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SOX3P41225 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SOX3P41225 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SOX3P41225 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SOX3P41225 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SOX3P41225 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SOX3P41225 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.22■□□□□ 0.99
SOX3P41225 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.22■□□□□ 0.99
SOX3P41225 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
SOX3P41225 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SOX3P41225 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SOX3P41225 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SOX3P41225 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.22■□□□□ 0.99
SOX3P41225 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
SOX3P41225 AC079834.2-201ENST00000609776 1949 ntBASIC21.21■□□□□ 0.99
SOX3P41225 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.21■□□□□ 0.99
SOX3P41225 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.21■□□□□ 0.99
SOX3P41225 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SOX3P41225 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SOX3P41225 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.21■□□□□ 0.99
SOX3P41225 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.21■□□□□ 0.99
SOX3P41225 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.21■□□□□ 0.99
SOX3P41225 AL117332.1-201ENST00000622628 974 ntBASIC21.21■□□□□ 0.99
SOX3P41225 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
SOX3P41225 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.21■□□□□ 0.99
SOX3P41225 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
SOX3P41225 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.21■□□□□ 0.99
SOX3P41225 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SOX3P41225 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
SOX3P41225 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.2■□□□□ 0.98
SOX3P41225 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.2■□□□□ 0.98
SOX3P41225 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.2■□□□□ 0.98
SOX3P41225 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SOX3P41225 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SOX3P41225 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SOX3P41225 AL022069.1-201ENST00000568025 1636 ntBASIC21.19■□□□□ 0.98
SOX3P41225 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SOX3P41225 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SOX3P41225 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SOX3P41225 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.19■□□□□ 0.98
SOX3P41225 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SOX3P41225 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SOX3P41225 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.19■□□□□ 0.98
SOX3P41225 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SOX3P41225 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SOX3P41225 DUSP8P5-201ENST00000422884 1815 ntBASIC21.19■□□□□ 0.98
SOX3P41225 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SOX3P41225 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.19■□□□□ 0.98
SOX3P41225 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SOX3P41225 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.18■□□□□ 0.98
SOX3P41225 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SOX3P41225 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.18■□□□□ 0.98
SOX3P41225 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.18■□□□□ 0.98
SOX3P41225 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SOX3P41225 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.18■□□□□ 0.98
SOX3P41225 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SOX3P41225 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SOX3P41225 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SOX3P41225 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SOX3P41225 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SOX3P41225 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SOX3P41225 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.17■□□□□ 0.98
SOX3P41225 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SOX3P41225 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SOX3P41225 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.17■□□□□ 0.98
SOX3P41225 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.17■□□□□ 0.98
SOX3P41225 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.17■□□□□ 0.98
SOX3P41225 MIR3621-201ENST00000580529 85 ntBASIC21.17■□□□□ 0.98
SOX3P41225 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SOX3P41225 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.17■□□□□ 0.98
SOX3P41225 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SOX3P41225 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms