Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
LIMS3P0CW19 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.21■□□□□ 0.83
LIMS3P0CW19 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMS3P0CW19 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMS3P0CW19 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMS3P0CW19 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.21■□□□□ 0.83
LIMS3P0CW19 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
LIMS3P0CW19 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIMS3P0CW19 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMS3P0CW19 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.21■□□□□ 0.83
LIMS3P0CW19 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMS3P0CW19 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
LIMS3P0CW19 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMS3P0CW19 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMS3P0CW19 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.2■□□□□ 0.82
LIMS3P0CW19 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMS3P0CW19 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
LIMS3P0CW19 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMS3P0CW19 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMS3P0CW19 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
LIMS3P0CW19 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMS3P0CW19 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.19■□□□□ 0.82
LIMS3P0CW19 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.19■□□□□ 0.82
LIMS3P0CW19 MIR639-201ENST00000384974 98 ntBASIC20.19■□□□□ 0.82
LIMS3P0CW19 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMS3P0CW19 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.19■□□□□ 0.82
LIMS3P0CW19 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.19■□□□□ 0.82
LIMS3P0CW19 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMS3P0CW19 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMS3P0CW19 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMS3P0CW19 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMS3P0CW19 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMS3P0CW19 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMS3P0CW19 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMS3P0CW19 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LIMS3P0CW19 RPS2P7-201ENST00000447334 885 ntBASIC20.18■□□□□ 0.82
LIMS3P0CW19 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.18■□□□□ 0.82
LIMS3P0CW19 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMS3P0CW19 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMS3P0CW19 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.18■□□□□ 0.82
LIMS3P0CW19 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LIMS3P0CW19 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMS3P0CW19 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMS3P0CW19 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.17■□□□□ 0.82
LIMS3P0CW19 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
LIMS3P0CW19 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.17■□□□□ 0.82
LIMS3P0CW19 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMS3P0CW19 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
LIMS3P0CW19 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
LIMS3P0CW19 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMS3P0CW19 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIMS3P0CW19 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIMS3P0CW19 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.16■□□□□ 0.82
LIMS3P0CW19 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIMS3P0CW19 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
LIMS3P0CW19 AC009831.1-201ENST00000580420 1582 ntBASIC20.16■□□□□ 0.82
LIMS3P0CW19 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.16■□□□□ 0.82
LIMS3P0CW19 AL022069.1-201ENST00000568025 1636 ntBASIC20.16■□□□□ 0.82
LIMS3P0CW19 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
LIMS3P0CW19 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMS3P0CW19 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.15■□□□□ 0.82
LIMS3P0CW19 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LIMS3P0CW19 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.15■□□□□ 0.82
LIMS3P0CW19 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.15■□□□□ 0.82
LIMS3P0CW19 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMS3P0CW19 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.15■□□□□ 0.82
LIMS3P0CW19 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.15■□□□□ 0.82
LIMS3P0CW19 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMS3P0CW19 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMS3P0CW19 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.15■□□□□ 0.82
LIMS3P0CW19 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMS3P0CW19 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMS3P0CW19 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMS3P0CW19 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
LIMS3P0CW19 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIMS3P0CW19 AC007375.3-201ENST00000600936 2314 ntBASIC20.14■□□□□ 0.82
LIMS3P0CW19 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LIMS3P0CW19 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LIMS3P0CW19 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LIMS3P0CW19 AC242852.2-201ENST00000615738 1807 ntBASIC20.14■□□□□ 0.81
LIMS3P0CW19 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
LIMS3P0CW19 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIMS3P0CW19 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIMS3P0CW19 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIMS3P0CW19 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIMS3P0CW19 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LIMS3P0CW19 AL592295.1-201ENST00000400984 884 ntBASIC20.14■□□□□ 0.81
LIMS3P0CW19 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIMS3P0CW19 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
LIMS3P0CW19 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIMS3P0CW19 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIMS3P0CW19 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.13■□□□□ 0.81
LIMS3P0CW19 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
LIMS3P0CW19 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.13■□□□□ 0.81
LIMS3P0CW19 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.13■□□□□ 0.81
LIMS3P0CW19 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.13■□□□□ 0.81
LIMS3P0CW19 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
LIMS3P0CW19 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIMS3P0CW19 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.12■□□□□ 0.81
LIMS3P0CW19 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms