Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
COL3A1P02461 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC30.34■■■□□ 2.45
COL3A1P02461 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC30.34■■■□□ 2.45
COL3A1P02461 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC30.34■■■□□ 2.45
COL3A1P02461 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
COL3A1P02461 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
COL3A1P02461 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
COL3A1P02461 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC30.34■■■□□ 2.45
COL3A1P02461 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
COL3A1P02461 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC30.33■■■□□ 2.45
COL3A1P02461 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC30.33■■■□□ 2.45
COL3A1P02461 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC30.32■■■□□ 2.44
COL3A1P02461 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
COL3A1P02461 MIR638-201ENST00000385237 100 ntBASIC30.32■■■□□ 2.44
COL3A1P02461 AC096631.2-201ENST00000436136 790 ntBASIC30.32■■■□□ 2.44
COL3A1P02461 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC30.32■■■□□ 2.44
COL3A1P02461 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
COL3A1P02461 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
COL3A1P02461 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL3A1P02461 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL3A1P02461 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC30.31■■■□□ 2.44
COL3A1P02461 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
COL3A1P02461 SRD5A1P1-201ENST00000442297 786 ntBASIC30.31■■■□□ 2.44
COL3A1P02461 NKILA-201ENST00000613231 537 ntTSL 4 BASIC30.31■■■□□ 2.44
COL3A1P02461 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL3A1P02461 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL3A1P02461 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC30.3■■■□□ 2.44
COL3A1P02461 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC30.3■■■□□ 2.44
COL3A1P02461 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC30.3■■■□□ 2.44
COL3A1P02461 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC30.3■■■□□ 2.44
COL3A1P02461 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC30.3■■■□□ 2.44
COL3A1P02461 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL3A1P02461 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC30.3■■■□□ 2.44
COL3A1P02461 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
COL3A1P02461 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL3A1P02461 AC006455.2-201ENST00000429931 906 ntBASIC30.29■■■□□ 2.44
COL3A1P02461 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC30.29■■■□□ 2.44
COL3A1P02461 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
COL3A1P02461 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
COL3A1P02461 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL3A1P02461 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
COL3A1P02461 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL3A1P02461 NALT1-201ENST00000429224 738 ntTSL 5 BASIC30.27■■■□□ 2.44
COL3A1P02461 AL139246.5-201ENST00000606645 996 ntBASIC30.27■■■□□ 2.44
COL3A1P02461 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL3A1P02461 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL3A1P02461 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
COL3A1P02461 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC30.26■■■□□ 2.44
COL3A1P02461 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC30.26■■■□□ 2.44
COL3A1P02461 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
COL3A1P02461 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
COL3A1P02461 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC30.26■■■□□ 2.43
COL3A1P02461 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC30.26■■■□□ 2.43
COL3A1P02461 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL3A1P02461 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC30.25■■■□□ 2.43
COL3A1P02461 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
COL3A1P02461 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
COL3A1P02461 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL3A1P02461 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL3A1P02461 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL3A1P02461 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.25■■■□□ 2.43
COL3A1P02461 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
COL3A1P02461 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC30.24■■■□□ 2.43
COL3A1P02461 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC30.24■■■□□ 2.43
COL3A1P02461 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
COL3A1P02461 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
COL3A1P02461 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL3A1P02461 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
COL3A1P02461 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
COL3A1P02461 AL031432.3-201ENST00000607698 485 ntBASIC30.23■■■□□ 2.43
COL3A1P02461 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL3A1P02461 ASB1-202ENST00000409297 878 ntTSL 5 BASIC30.22■■■□□ 2.43
COL3A1P02461 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC30.22■■■□□ 2.43
COL3A1P02461 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
COL3A1P02461 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL3A1P02461 VGF-203ENST00000611537 1622 ntTSL 5 BASIC30.22■■■□□ 2.43
COL3A1P02461 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
COL3A1P02461 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC30.21■■■□□ 2.43
COL3A1P02461 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC30.21■■■□□ 2.43
COL3A1P02461 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC30.21■■■□□ 2.43
COL3A1P02461 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
COL3A1P02461 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC30.21■■■□□ 2.43
COL3A1P02461 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC30.21■■■□□ 2.43
COL3A1P02461 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL3A1P02461 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC30.21■■■□□ 2.43
COL3A1P02461 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL3A1P02461 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
COL3A1P02461 AC099791.2-201ENST00000605725 427 ntBASIC30.2■■■□□ 2.43
COL3A1P02461 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
COL3A1P02461 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
COL3A1P02461 ABCB10P4-201ENST00000566803 2184 ntBASIC30.2■■■□□ 2.43
COL3A1P02461 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
COL3A1P02461 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
COL3A1P02461 PTCHD3P2-201ENST00000424937 1205 ntBASIC30.19■■■□□ 2.42
COL3A1P02461 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
COL3A1P02461 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC30.19■■■□□ 2.42
COL3A1P02461 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC30.19■■■□□ 2.42
COL3A1P02461 SERBP1P1-201ENST00000396021 1160 ntBASIC30.19■■■□□ 2.42
COL3A1P02461 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC30.19■■■□□ 2.42
COL3A1P02461 RALB-208ENST00000631312 311 ntTSL 5 BASIC30.19■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms