Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
NPHP4O75161 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC32.61■■■□□ 2.81
NPHP4O75161 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC32.61■■■□□ 2.81
NPHP4O75161 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
NPHP4O75161 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
NPHP4O75161 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
NPHP4O75161 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC32.6■■■□□ 2.81
NPHP4O75161 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
NPHP4O75161 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC32.6■■■□□ 2.81
NPHP4O75161 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC32.59■■■□□ 2.81
NPHP4O75161 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC32.59■■■□□ 2.81
NPHP4O75161 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
NPHP4O75161 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
NPHP4O75161 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC32.59■■■□□ 2.81
NPHP4O75161 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC32.59■■■□□ 2.81
NPHP4O75161 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
NPHP4O75161 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
NPHP4O75161 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC32.58■■■□□ 2.81
NPHP4O75161 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC32.58■■■□□ 2.81
NPHP4O75161 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC32.58■■■□□ 2.81
NPHP4O75161 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC32.58■■■□□ 2.81
NPHP4O75161 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC32.58■■■□□ 2.81
NPHP4O75161 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
NPHP4O75161 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC32.57■■■□□ 2.8
NPHP4O75161 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
NPHP4O75161 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC32.57■■■□□ 2.8
NPHP4O75161 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
NPHP4O75161 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC32.57■■■□□ 2.8
NPHP4O75161 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC32.57■■■□□ 2.8
NPHP4O75161 TMEM191A-211ENST00000637163 1067 ntBASIC32.57■■■□□ 2.8
NPHP4O75161 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC32.57■■■□□ 2.8
NPHP4O75161 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC32.57■■■□□ 2.8
NPHP4O75161 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC32.57■■■□□ 2.8
NPHP4O75161 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC32.56■■■□□ 2.8
NPHP4O75161 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
NPHP4O75161 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC32.56■■■□□ 2.8
NPHP4O75161 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
NPHP4O75161 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC32.56■■■□□ 2.8
NPHP4O75161 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC32.56■■■□□ 2.8
NPHP4O75161 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC32.56■■■□□ 2.8
NPHP4O75161 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
NPHP4O75161 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
NPHP4O75161 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC32.55■■■□□ 2.8
NPHP4O75161 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
NPHP4O75161 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC32.55■■■□□ 2.8
NPHP4O75161 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
NPHP4O75161 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
NPHP4O75161 AL355802.2-201ENST00000402069 882 ntBASIC32.54■■■□□ 2.8
NPHP4O75161 PPP1R14BP3-201ENST00000509033 445 ntBASIC32.54■■■□□ 2.8
NPHP4O75161 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
NPHP4O75161 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC32.53■■■□□ 2.8
NPHP4O75161 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC32.53■■■□□ 2.8
NPHP4O75161 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
NPHP4O75161 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC32.53■■■□□ 2.8
NPHP4O75161 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC32.53■■■□□ 2.8
NPHP4O75161 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
NPHP4O75161 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
NPHP4O75161 MAP2K4P1-201ENST00000438453 1195 ntBASIC32.52■■■□□ 2.8
NPHP4O75161 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
NPHP4O75161 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC32.52■■■□□ 2.8
NPHP4O75161 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC32.52■■■□□ 2.8
NPHP4O75161 AC066615.1-201ENST00000640911 628 ntBASIC32.52■■■□□ 2.8
NPHP4O75161 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC32.52■■■□□ 2.8
NPHP4O75161 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
NPHP4O75161 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC32.52■■■□□ 2.8
NPHP4O75161 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.8
NPHP4O75161 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC32.51■■■□□ 2.8
NPHP4O75161 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
NPHP4O75161 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC32.51■■■□□ 2.8
NPHP4O75161 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC32.51■■■□□ 2.79
NPHP4O75161 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
NPHP4O75161 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
NPHP4O75161 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
NPHP4O75161 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC32.5■■■□□ 2.79
NPHP4O75161 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC32.5■■■□□ 2.79
NPHP4O75161 GAS2L1P2-201ENST00000436355 1356 ntBASIC32.5■■■□□ 2.79
NPHP4O75161 AC026185.1-201ENST00000445748 174 ntBASIC32.5■■■□□ 2.79
NPHP4O75161 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC32.5■■■□□ 2.79
NPHP4O75161 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC32.5■■■□□ 2.79
NPHP4O75161 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC32.49■■■□□ 2.79
NPHP4O75161 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC32.49■■■□□ 2.79
NPHP4O75161 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC32.49■■■□□ 2.79
NPHP4O75161 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC32.49■■■□□ 2.79
NPHP4O75161 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC32.49■■■□□ 2.79
NPHP4O75161 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
NPHP4O75161 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC32.48■■■□□ 2.79
NPHP4O75161 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC32.48■■■□□ 2.79
NPHP4O75161 AC139426.1-201ENST00000568218 2529 ntBASIC32.48■■■□□ 2.79
NPHP4O75161 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC32.48■■■□□ 2.79
NPHP4O75161 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC32.48■■■□□ 2.79
NPHP4O75161 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC32.48■■■□□ 2.79
NPHP4O75161 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC32.48■■■□□ 2.79
NPHP4O75161 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC32.48■■■□□ 2.79
NPHP4O75161 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC32.48■■■□□ 2.79
NPHP4O75161 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
NPHP4O75161 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC32.48■■■□□ 2.79
NPHP4O75161 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC32.48■■■□□ 2.79
NPHP4O75161 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
NPHP4O75161 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC32.48■■■□□ 2.79
NPHP4O75161 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC32.47■■■□□ 2.79
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms