Protein–RNA interactions for Protein: O75131

CPNE3, Copine-3, humanhuman

Known RBP Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3O75131 AL161729.1-201ENST00000604104 1402 ntBASIC21.68■■□□□ 1.06
CPNE3O75131 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPNE3O75131 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CPNE3O75131 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CPNE3O75131 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE3O75131 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CPNE3O75131 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.67■■□□□ 1.06
CPNE3O75131 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE3O75131 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.67■■□□□ 1.06
CPNE3O75131 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.67■■□□□ 1.06
CPNE3O75131 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CPNE3O75131 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.67■■□□□ 1.06
CPNE3O75131 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE3O75131 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CPNE3O75131 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.67■■□□□ 1.06
CPNE3O75131 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE3O75131 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE3O75131 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE3O75131 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE3O75131 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE3O75131 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE3O75131 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CPNE3O75131 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.65■■□□□ 1.06
CPNE3O75131 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CPNE3O75131 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPNE3O75131 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPNE3O75131 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.65■■□□□ 1.06
CPNE3O75131 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPNE3O75131 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CPNE3O75131 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CPNE3O75131 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.64■■□□□ 1.06
CPNE3O75131 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CPNE3O75131 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CPNE3O75131 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CPNE3O75131 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CPNE3O75131 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.64■■□□□ 1.05
CPNE3O75131 AC142381.2-201ENST00000566120 298 ntBASIC21.64■■□□□ 1.05
CPNE3O75131 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CPNE3O75131 HLA-L-211ENST00000482052 1765 ntBASIC21.64■■□□□ 1.05
CPNE3O75131 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.64■■□□□ 1.05
CPNE3O75131 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CPNE3O75131 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CPNE3O75131 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CPNE3O75131 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.63■■□□□ 1.05
CPNE3O75131 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.63■■□□□ 1.05
CPNE3O75131 AC024257.2-201ENST00000549699 147 ntBASIC21.63■■□□□ 1.05
CPNE3O75131 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
CPNE3O75131 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
CPNE3O75131 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CPNE3O75131 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.63■■□□□ 1.05
CPNE3O75131 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.63■■□□□ 1.05
CPNE3O75131 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CPNE3O75131 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CPNE3O75131 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CPNE3O75131 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE3O75131 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE3O75131 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.62■■□□□ 1.05
CPNE3O75131 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE3O75131 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE3O75131 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE3O75131 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE3O75131 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.62■■□□□ 1.05
CPNE3O75131 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.62■■□□□ 1.05
CPNE3O75131 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.62■■□□□ 1.05
CPNE3O75131 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE3O75131 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CPNE3O75131 SYT6-210ENST00000641643 1587 ntBASIC21.61■■□□□ 1.05
CPNE3O75131 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CPNE3O75131 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.61■■□□□ 1.05
CPNE3O75131 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CPNE3O75131 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CPNE3O75131 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CPNE3O75131 EDA-201ENST00000338901 1233 ntBASIC21.61■■□□□ 1.05
CPNE3O75131 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CPNE3O75131 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.61■■□□□ 1.05
CPNE3O75131 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.61■■□□□ 1.05
CPNE3O75131 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.61■■□□□ 1.05
CPNE3O75131 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.61■■□□□ 1.05
CPNE3O75131 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.61■■□□□ 1.05
CPNE3O75131 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE3O75131 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE3O75131 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE3O75131 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE3O75131 AC009102.2-201ENST00000606772 1639 ntBASIC21.6■■□□□ 1.05
CPNE3O75131 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.6■■□□□ 1.05
CPNE3O75131 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.6■■□□□ 1.05
CPNE3O75131 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE3O75131 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE3O75131 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CPNE3O75131 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CPNE3O75131 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CPNE3O75131 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CPNE3O75131 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.59■■□□□ 1.05
CPNE3O75131 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.59■■□□□ 1.05
CPNE3O75131 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.59■■□□□ 1.05
CPNE3O75131 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CPNE3O75131 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CPNE3O75131 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CPNE3O75131 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
CPNE3O75131 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms