Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDCBPO00560 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SDCBPO00560 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
SDCBPO00560 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.2■□□□□ 0.66
SDCBPO00560 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SDCBPO00560 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDCBPO00560 LONRF2P2-201ENST00000439212 571 ntBASIC19.2■□□□□ 0.66
SDCBPO00560 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDCBPO00560 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SDCBPO00560 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDCBPO00560 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDCBPO00560 C1orf229-201ENST00000623686 2258 ntBASIC19.2■□□□□ 0.66
SDCBPO00560 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SDCBPO00560 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDCBPO00560 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SDCBPO00560 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDCBPO00560 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SDCBPO00560 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDCBPO00560 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.19■□□□□ 0.66
SDCBPO00560 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.19■□□□□ 0.66
SDCBPO00560 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SDCBPO00560 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDCBPO00560 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.18■□□□□ 0.66
SDCBPO00560 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.18■□□□□ 0.66
SDCBPO00560 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDCBPO00560 AC090877.2-201ENST00000558441 1738 ntBASIC19.18■□□□□ 0.66
SDCBPO00560 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.18■□□□□ 0.66
SDCBPO00560 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.18■□□□□ 0.66
SDCBPO00560 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SDCBPO00560 BHLHE23-202ENST00000612929 1109 ntBASIC19.18■□□□□ 0.66
SDCBPO00560 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SDCBPO00560 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SDCBPO00560 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SDCBPO00560 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDCBPO00560 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDCBPO00560 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.17■□□□□ 0.66
SDCBPO00560 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SDCBPO00560 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.17■□□□□ 0.66
SDCBPO00560 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SDCBPO00560 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SDCBPO00560 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.17■□□□□ 0.66
SDCBPO00560 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.17■□□□□ 0.66
SDCBPO00560 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SDCBPO00560 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDCBPO00560 LINC00565-201ENST00000562710 2331 ntBASIC19.17■□□□□ 0.66
SDCBPO00560 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDCBPO00560 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SDCBPO00560 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDCBPO00560 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDCBPO00560 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SDCBPO00560 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.16■□□□□ 0.66
SDCBPO00560 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SDCBPO00560 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDCBPO00560 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDCBPO00560 AC004987.1-201ENST00000428627 508 ntBASIC19.16■□□□□ 0.66
SDCBPO00560 ATP5G2P3-201ENST00000429083 425 ntBASIC19.16■□□□□ 0.66
SDCBPO00560 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.16■□□□□ 0.66
SDCBPO00560 DUSP8P3-201ENST00000399571 1760 ntBASIC19.16■□□□□ 0.66
SDCBPO00560 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDCBPO00560 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDCBPO00560 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SDCBPO00560 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.15■□□□□ 0.66
SDCBPO00560 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SDCBPO00560 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
SDCBPO00560 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.15■□□□□ 0.66
SDCBPO00560 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SDCBPO00560 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
SDCBPO00560 AC092068.2-201ENST00000590491 1708 ntBASIC19.14■□□□□ 0.66
SDCBPO00560 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SDCBPO00560 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
SDCBPO00560 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDCBPO00560 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SDCBPO00560 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SDCBPO00560 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.14■□□□□ 0.65
SDCBPO00560 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SDCBPO00560 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
SDCBPO00560 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDCBPO00560 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDCBPO00560 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SDCBPO00560 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SDCBPO00560 MTX2-204ENST00000443241 799 ntTSL 3 BASIC19.13■□□□□ 0.65
SDCBPO00560 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SDCBPO00560 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDCBPO00560 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDCBPO00560 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
SDCBPO00560 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDCBPO00560 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDCBPO00560 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SDCBPO00560 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms