Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 COX5BP1-201ENST00000507622 393 ntBASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AC104506.1-201ENST00000609247 429 ntBASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AC244669.2-201ENST00000612320 853 ntBASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AL358472.5-202ENST00000641448 1267 ntBASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AL354989.2-201ENST00000435838 1540 ntBASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 AC131212.3-201ENST00000624087 4219 ntBASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 MIR193BHG-211ENST00000641433 5365 ntBASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HIF3AQ9Y2N7 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 CU639417.3-201ENST00000624240 1404 ntBASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AC006001.1-201ENST00000325130 474 ntBASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AC007551.1-201ENST00000457394 519 ntBASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AL596325.1-201ENST00000563991 1082 ntBASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AL358472.3-201ENST00000608147 415 ntBASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 ZACNP1-201ENST00000612259 710 ntBASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 AC027601.3-201ENST00000622907 509 ntBASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HIF3AQ9Y2N7 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.31
HIF3AQ9Y2N7 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
HIF3AQ9Y2N7 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
HIF3AQ9Y2N7 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
HIF3AQ9Y2N7 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.31
HIF3AQ9Y2N7 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
HIF3AQ9Y2N7 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms