Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 AL022313.4-201ENST00000562756 2046 ntBASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 CNN2P10-201ENST00000443067 918 ntBASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 HOMER2P2-201ENST00000451621 847 ntBASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 AC105233.6-201ENST00000642093 218 ntBASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 PDIA3P1-201ENST00000471856 1510 ntBASIC13.95□□□□□ -0.18
VPS29Q9UBQ0 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 MIR326-201ENST00000362220 95 ntBASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 BOLA2P3-201ENST00000404566 256 ntBASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 AC079316.1-201ENST00000548397 411 ntBASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 AL157996.1-201ENST00000624684 2299 ntBASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
VPS29Q9UBQ0 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms