Protein–RNA interactions for Protein: Q8IVM7

LINC00346, Putative uncharacterized protein encoded by LINC00346, humanhuman

Predictions only

Length 164 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00346Q8IVM7 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 RPL8-205ENST00000527914 551 ntTSL 3 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 BTNL10-201ENST00000595971 695 ntBASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 MVK-217ENST00000639206 367 ntTSL 5 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 KRT8P28-201ENST00000433288 1390 ntBASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC00346Q8IVM7 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 KRT8P24-201ENST00000560290 1559 ntBASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 AC007551.1-201ENST00000457394 519 ntBASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 CDC23-208ENST00000505120 455 ntTSL 3 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 COX5BP1-201ENST00000507622 393 ntBASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 MEX3B-202ENST00000558133 4333 ntBASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC00346Q8IVM7 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LINC00346Q8IVM7 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
LINC00346Q8IVM7 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms