Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SUN1-204ENST00000403868 978 ntTSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 AC004066.1-201ENST00000502488 802 ntBASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 GAPDHP40-201ENST00000505218 1006 ntBASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 AC104596.2-201ENST00000512793 793 ntBASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 RN7SL560P-201ENST00000577943 264 ntBASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
PDLIM3Q53GG5 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 AL355334.1-201ENST00000417713 215 ntBASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 EIF4HP1-201ENST00000453115 687 ntBASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 FTH1-202ENST00000526640 786 ntTSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 AC004461.2-201ENST00000629517 803 ntBASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 AL928921.2-201ENST00000641325 2442 ntBASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
PDLIM3Q53GG5 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms