Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC092570.1-201ENST00000414446 469 ntBASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 RN7SL128P-201ENST00000467883 305 ntBASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC88AQ3V6T2 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 AL121949.3-201ENST00000406684 385 ntBASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 AC087203.1-201ENST00000532111 1181 ntBASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 URAHP-205ENST00000610227 398 ntBASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 HPX-213ENST00000615166 826 ntTSL 5 BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC88AQ3V6T2 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 RN7SL832P-201ENST00000607781 1756 ntBASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 FDPSP7-201ENST00000429043 1054 ntBASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 HIST1H2APS2-201ENST00000454426 370 ntBASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 TREX1-203ENST00000456089 629 ntTSL 3 BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC88AQ3V6T2 HPD-204ENST00000543163 1709 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 CCT8L1P-201ENST00000465400 1674 ntBASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 AP001267.2-201ENST00000532619 2086 ntBASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 PDXDC2P-206ENST00000534700 1315 ntBASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 BCRP4-201ENST00000506079 804 ntBASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 GAS7-216ENST00000583882 553 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 NEK4P3-201ENST00000604859 544 ntBASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 PSME2-217ENST00000615264 874 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 PSME2-218ENST00000630027 185 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC88AQ3V6T2 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms