Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
SHROOM1Q2M3G4 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHROOM1Q2M3G4 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHROOM1Q2M3G4 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SHROOM1Q2M3G4 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHROOM1Q2M3G4 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
SHROOM1Q2M3G4 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SHROOM1Q2M3G4 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 RGS5-216ENST00000449680 788 ntTSL 3 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 NAA40-205ENST00000539656 577 ntTSL 4 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 AC140658.4-201ENST00000561990 352 ntBASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 RN7SL832P-201ENST00000607781 1756 ntBASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 FTX-216ENST00000638985 1367 ntTSL 5 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SHROOM1Q2M3G4 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 AC113367.3-201ENST00000508316 1912 ntBASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 PYY2-201ENST00000315776 282 ntBASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 ERP29P1-201ENST00000442902 706 ntBASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 AC005740.1-201ENST00000515639 522 ntBASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 AC138701.2-201ENST00000553634 226 ntBASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 AC068867.1-201ENST00000559855 150 ntBASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 AL133467.4-201ENST00000602953 725 ntBASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHROOM1Q2M3G4 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms