Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
ABCA4P78363 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC12.5□□□□□ -0.41
ABCA4P78363 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA4P78363 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
ABCA4P78363 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA4P78363 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 COX20P1-201ENST00000366529 357 ntBASIC12.5□□□□□ -0.41
ABCA4P78363 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC12.5□□□□□ -0.41
ABCA4P78363 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC12.5□□□□□ -0.41
ABCA4P78363 HLA-DMA-203ENST00000395305 777 ntBASIC12.5□□□□□ -0.41
ABCA4P78363 GAS5-209ENST00000430245 723 ntTSL 3 BASIC12.5□□□□□ -0.41
ABCA4P78363 ST13P19-201ENST00000442505 1124 ntBASIC12.5□□□□□ -0.41
ABCA4P78363 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC12.5□□□□□ -0.41
ABCA4P78363 RN7SL530P-201ENST00000485097 298 ntBASIC12.5□□□□□ -0.41
ABCA4P78363 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC12.5□□□□□ -0.41
ABCA4P78363 AC114947.1-202ENST00000514136 344 ntBASIC12.5□□□□□ -0.41
ABCA4P78363 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC12.5□□□□□ -0.41
ABCA4P78363 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC12.5□□□□□ -0.41
ABCA4P78363 MIR6858-201ENST00000620733 67 ntBASIC12.5□□□□□ -0.41
ABCA4P78363 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 HLA-DQB1-202ENST00000399079 1501 ntBASIC12.5□□□□□ -0.41
ABCA4P78363 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
ABCA4P78363 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC12.5□□□□□ -0.41
ABCA4P78363 WTIP-202ENST00000590071 13665 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
ABCA4P78363 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.49□□□□□ -0.41
ABCA4P78363 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.49□□□□□ -0.41
ABCA4P78363 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
ABCA4P78363 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.49□□□□□ -0.41
ABCA4P78363 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC12.49□□□□□ -0.41
ABCA4P78363 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC12.49□□□□□ -0.41
ABCA4P78363 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC12.49□□□□□ -0.41
ABCA4P78363 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC12.49□□□□□ -0.41
ABCA4P78363 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC12.49□□□□□ -0.41
ABCA4P78363 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC12.49□□□□□ -0.41
ABCA4P78363 AGPAT5P1-201ENST00000455855 1019 ntBASIC12.49□□□□□ -0.41
ABCA4P78363 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC12.49□□□□□ -0.41
ABCA4P78363 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC12.49□□□□□ -0.41
ABCA4P78363 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
ABCA4P78363 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC12.49□□□□□ -0.41
ABCA4P78363 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC12.49□□□□□ -0.41
ABCA4P78363 AC105917.1-201ENST00000506637 2539 ntBASIC12.49□□□□□ -0.41
ABCA4P78363 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
ABCA4P78363 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
ABCA4P78363 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
ABCA4P78363 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC12.49□□□□□ -0.41
ABCA4P78363 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC12.49□□□□□ -0.41
ABCA4P78363 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
ABCA4P78363 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC12.49□□□□□ -0.41
ABCA4P78363 DPY19L2P5-201ENST00000456300 331 ntBASIC12.49□□□□□ -0.41
ABCA4P78363 KRT8P1-201ENST00000557533 1207 ntBASIC12.49□□□□□ -0.41
ABCA4P78363 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
ABCA4P78363 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
ABCA4P78363 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
ABCA4P78363 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
ABCA4P78363 MRPL37P1-201ENST00000592451 1337 ntBASIC12.48□□□□□ -0.41
ABCA4P78363 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
ABCA4P78363 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.48□□□□□ -0.41
ABCA4P78363 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
ABCA4P78363 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms