Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
RNF4P78317 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
RNF4P78317 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
RNF4P78317 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
RNF4P78317 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNF4P78317 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
RNF4P78317 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
RNF4P78317 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.47□□□□□ -0.25
RNF4P78317 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 FAM45BP-202ENST00000592932 1624 ntBASIC13.47□□□□□ -0.25
RNF4P78317 AHCYP4-201ENST00000419201 1315 ntBASIC13.47□□□□□ -0.25
RNF4P78317 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
RNF4P78317 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 AL009178.2-201ENST00000597278 2719 ntBASIC13.47□□□□□ -0.25
RNF4P78317 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
RNF4P78317 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC13.47□□□□□ -0.25
RNF4P78317 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC13.47□□□□□ -0.25
RNF4P78317 HIST2H2BC-201ENST00000498492 580 ntBASIC13.47□□□□□ -0.25
RNF4P78317 RCC2P8-201ENST00000502779 1035 ntBASIC13.47□□□□□ -0.25
RNF4P78317 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC13.47□□□□□ -0.25
RNF4P78317 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC13.47□□□□□ -0.25
RNF4P78317 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.47□□□□□ -0.25
RNF4P78317 AL359183.1-201ENST00000623796 2132 ntBASIC13.47□□□□□ -0.25
RNF4P78317 AC100757.4-201ENST00000626934 759 ntBASIC13.47□□□□□ -0.25
RNF4P78317 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.47□□□□□ -0.25
RNF4P78317 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC13.47□□□□□ -0.25
RNF4P78317 AL805961.1-203ENST00000641078 1258 ntBASIC13.47□□□□□ -0.25
RNF4P78317 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
RNF4P78317 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNF4P78317 AC015802.1-201ENST00000588104 1449 ntBASIC13.47□□□□□ -0.25
RNF4P78317 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
RNF4P78317 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
RNF4P78317 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
RNF4P78317 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
RNF4P78317 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.46□□□□□ -0.25
RNF4P78317 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
RNF4P78317 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.46□□□□□ -0.25
RNF4P78317 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 SDCCAG3P2-201ENST00000326105 1023 ntBASIC13.46□□□□□ -0.25
RNF4P78317 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 RN7SKP214-201ENST00000364208 315 ntBASIC13.46□□□□□ -0.25
RNF4P78317 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.46□□□□□ -0.25
RNF4P78317 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 KRT18P36-201ENST00000411618 1276 ntBASIC13.46□□□□□ -0.25
RNF4P78317 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.46□□□□□ -0.25
RNF4P78317 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.46□□□□□ -0.25
RNF4P78317 XBP1P1-201ENST00000436573 652 ntBASIC13.46□□□□□ -0.25
RNF4P78317 REEP1-202ENST00000453231 940 ntTSL 2 BASIC13.46□□□□□ -0.25
RNF4P78317 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC13.46□□□□□ -0.25
RNF4P78317 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.46□□□□□ -0.25
RNF4P78317 SDHD-202ENST00000525291 790 ntTSL 3 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms