Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.12□□□□□ -0.31
SUMO3P55854 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.12□□□□□ -0.31
SUMO3P55854 AC006033.1-201ENST00000440505 426 ntBASIC13.12□□□□□ -0.31
SUMO3P55854 AC244107.1-201ENST00000442033 332 ntBASIC13.12□□□□□ -0.31
SUMO3P55854 AC091804.1-201ENST00000486888 567 ntBASIC13.12□□□□□ -0.31
SUMO3P55854 AC108725.1-201ENST00000495472 409 ntBASIC13.12□□□□□ -0.31
SUMO3P55854 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC13.12□□□□□ -0.31
SUMO3P55854 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC13.12□□□□□ -0.31
SUMO3P55854 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.12□□□□□ -0.31
SUMO3P55854 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.12□□□□□ -0.31
SUMO3P55854 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.12□□□□□ -0.31
SUMO3P55854 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
SUMO3P55854 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.12□□□□□ -0.31
SUMO3P55854 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
SUMO3P55854 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.12□□□□□ -0.31
SUMO3P55854 AC092053.3-201ENST00000641308 4975 ntBASIC13.12□□□□□ -0.31
SUMO3P55854 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SUMO3P55854 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.11□□□□□ -0.31
SUMO3P55854 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SUMO3P55854 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SUMO3P55854 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SUMO3P55854 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
SUMO3P55854 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SUMO3P55854 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.11□□□□□ -0.31
SUMO3P55854 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SUMO3P55854 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.11□□□□□ -0.31
SUMO3P55854 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.11□□□□□ -0.31
SUMO3P55854 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.11□□□□□ -0.31
SUMO3P55854 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
SUMO3P55854 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.11□□□□□ -0.31
SUMO3P55854 AC104073.2-201ENST00000453737 312 ntBASIC13.11□□□□□ -0.31
SUMO3P55854 KRT18P15-201ENST00000458108 1291 ntBASIC13.11□□□□□ -0.31
SUMO3P55854 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.11□□□□□ -0.31
SUMO3P55854 AL512310.5-201ENST00000551999 515 ntBASIC13.11□□□□□ -0.31
SUMO3P55854 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.11□□□□□ -0.31
SUMO3P55854 AC092299.1-201ENST00000632679 757 ntBASIC13.11□□□□□ -0.31
SUMO3P55854 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC13.11□□□□□ -0.31
SUMO3P55854 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC13.11□□□□□ -0.31
SUMO3P55854 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SUMO3P55854 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SUMO3P55854 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SUMO3P55854 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SUMO3P55854 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.11□□□□□ -0.31
SUMO3P55854 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.11□□□□□ -0.31
SUMO3P55854 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SUMO3P55854 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SUMO3P55854 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC13.1□□□□□ -0.31
SUMO3P55854 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SUMO3P55854 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SUMO3P55854 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SUMO3P55854 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SUMO3P55854 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
SUMO3P55854 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.1□□□□□ -0.31
SUMO3P55854 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms