Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.42■□□□□ 0.54
COL18A1P39060 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 USP39-207ENST00000450066 2086 ntTSL 2 BASIC18.42■□□□□ 0.54
COL18A1P39060 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 SNU13-204ENST00000402458 462 ntTSL 3 BASIC18.42■□□□□ 0.54
COL18A1P39060 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC18.42■□□□□ 0.54
COL18A1P39060 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC18.42■□□□□ 0.54
COL18A1P39060 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC18.42■□□□□ 0.54
COL18A1P39060 RN7SL523P-201ENST00000484401 298 ntBASIC18.42■□□□□ 0.54
COL18A1P39060 AC093700.1-201ENST00000503348 717 ntBASIC18.42■□□□□ 0.54
COL18A1P39060 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC18.42■□□□□ 0.54
COL18A1P39060 AC016582.2-202ENST00000587765 1094 ntBASIC18.42■□□□□ 0.54
COL18A1P39060 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC18.42■□□□□ 0.54
COL18A1P39060 AC110057.1-201ENST00000636031 898 ntBASIC18.42■□□□□ 0.54
COL18A1P39060 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 AC024075.2-201ENST00000598112 1473 ntBASIC18.42■□□□□ 0.54
COL18A1P39060 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL18A1P39060 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL18A1P39060 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
COL18A1P39060 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.41■□□□□ 0.54
COL18A1P39060 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL18A1P39060 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.41■□□□□ 0.54
COL18A1P39060 AC113367.3-201ENST00000508316 1912 ntBASIC18.41■□□□□ 0.54
COL18A1P39060 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL18A1P39060 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
COL18A1P39060 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
COL18A1P39060 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC18.41■□□□□ 0.54
COL18A1P39060 AC010086.2-201ENST00000428616 226 ntBASIC18.41■□□□□ 0.54
COL18A1P39060 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC18.41■□□□□ 0.54
COL18A1P39060 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC18.41■□□□□ 0.54
COL18A1P39060 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC18.41■□□□□ 0.54
COL18A1P39060 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL18A1P39060 RCC2P1-201ENST00000452257 1476 ntBASIC18.41■□□□□ 0.54
COL18A1P39060 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC18.41■□□□□ 0.54
COL18A1P39060 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC18.41■□□□□ 0.54
COL18A1P39060 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL18A1P39060 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL18A1P39060 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.41■□□□□ 0.54
COL18A1P39060 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.41■□□□□ 0.54
COL18A1P39060 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL18A1P39060 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL18A1P39060 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC18.41■□□□□ 0.54
COL18A1P39060 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL18A1P39060 AC012617.1-204ENST00000586340 2305 ntBASIC18.4■□□□□ 0.54
COL18A1P39060 AC041040.1-201ENST00000425197 460 ntBASIC18.4■□□□□ 0.54
COL18A1P39060 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC18.4■□□□□ 0.54
COL18A1P39060 RN7SL578P-201ENST00000477781 283 ntBASIC18.4■□□□□ 0.54
COL18A1P39060 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC18.4■□□□□ 0.54
COL18A1P39060 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC18.4■□□□□ 0.54
COL18A1P39060 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC18.4■□□□□ 0.54
COL18A1P39060 CCND3P2-201ENST00000579393 537 ntBASIC18.4■□□□□ 0.54
COL18A1P39060 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL18A1P39060 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COL18A1P39060 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL18A1P39060 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL18A1P39060 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL18A1P39060 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC18.4■□□□□ 0.54
COL18A1P39060 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL18A1P39060 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
COL18A1P39060 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.4■□□□□ 0.54
COL18A1P39060 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL18A1P39060 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL18A1P39060 AC132872.4-202ENST00000622924 2756 ntBASIC18.4■□□□□ 0.54
COL18A1P39060 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL18A1P39060 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL18A1P39060 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL18A1P39060 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC18.4■□□□□ 0.54
COL18A1P39060 BX072579.1-201ENST00000449453 344 ntTSL 3 BASIC18.4■□□□□ 0.54
COL18A1P39060 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC18.4■□□□□ 0.54
COL18A1P39060 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC18.4■□□□□ 0.54
COL18A1P39060 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC18.4■□□□□ 0.54
COL18A1P39060 RN7SL602P-201ENST00000578326 324 ntBASIC18.4■□□□□ 0.54
COL18A1P39060 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC18.4■□□□□ 0.54
COL18A1P39060 RN7SL718P-201ENST00000581254 303 ntBASIC18.4■□□□□ 0.54
COL18A1P39060 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL18A1P39060 CSTP2-201ENST00000610599 398 ntBASIC18.4■□□□□ 0.54
COL18A1P39060 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL18A1P39060 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC18.4■□□□□ 0.54
COL18A1P39060 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC18.4■□□□□ 0.54
COL18A1P39060 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC18.4■□□□□ 0.54
COL18A1P39060 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL18A1P39060 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL18A1P39060 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL18A1P39060 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 STK16-202ENST00000409260 1493 ntTSL 5 BASIC18.39■□□□□ 0.53
COL18A1P39060 AC020910.6-201ENST00000623084 1459 ntBASIC18.39■□□□□ 0.53
COL18A1P39060 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
COL18A1P39060 FMO6P-201ENST00000236166 1620 ntBASIC18.39■□□□□ 0.53
COL18A1P39060 AL050341.2-201ENST00000567508 1541 ntBASIC18.39■□□□□ 0.53
COL18A1P39060 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL18A1P39060 OR7E155P-201ENST00000412208 1014 ntBASIC18.39■□□□□ 0.53
COL18A1P39060 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms