Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A5P29400 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A5P29400 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A5P29400 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.83■□□□□ 0.28
COL4A5P29400 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC16.83■□□□□ 0.28
COL4A5P29400 RN7SL684P-201ENST00000465665 294 ntBASIC16.83■□□□□ 0.28
COL4A5P29400 AC092910.2-201ENST00000491262 348 ntBASIC16.83■□□□□ 0.28
COL4A5P29400 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
COL4A5P29400 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC16.83■□□□□ 0.28
COL4A5P29400 AP003040.1-201ENST00000532044 1024 ntBASIC16.83■□□□□ 0.28
COL4A5P29400 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
COL4A5P29400 FAM187B2P-201ENST00000577135 713 ntBASIC16.83■□□□□ 0.28
COL4A5P29400 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC16.83■□□□□ 0.28
COL4A5P29400 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC16.83■□□□□ 0.28
COL4A5P29400 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC16.83■□□□□ 0.28
COL4A5P29400 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A5P29400 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
COL4A5P29400 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A5P29400 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A5P29400 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A5P29400 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.83■□□□□ 0.28
COL4A5P29400 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A5P29400 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL4A5P29400 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
COL4A5P29400 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 FAU-201ENST00000279259 461 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A5P29400 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A5P29400 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC16.82■□□□□ 0.28
COL4A5P29400 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 DKKL1P1-201ENST00000400550 698 ntBASIC16.82■□□□□ 0.28
COL4A5P29400 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A5P29400 AC005722.1-201ENST00000431878 964 ntBASIC16.82■□□□□ 0.28
COL4A5P29400 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 KRT18P15-201ENST00000458108 1291 ntBASIC16.82■□□□□ 0.28
COL4A5P29400 AC112250.1-201ENST00000504640 745 ntBASIC16.82■□□□□ 0.28
COL4A5P29400 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC16.82■□□□□ 0.28
COL4A5P29400 GARS-210ENST00000627489 324 ntTSL 4 BASIC16.82■□□□□ 0.28
COL4A5P29400 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC16.82■□□□□ 0.28
COL4A5P29400 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC16.82■□□□□ 0.28
COL4A5P29400 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A5P29400 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
COL4A5P29400 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A5P29400 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A5P29400 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.82■□□□□ 0.28
COL4A5P29400 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COL4A5P29400 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
COL4A5P29400 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
COL4A5P29400 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL4A5P29400 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.82■□□□□ 0.28
COL4A5P29400 AC103702.1-201ENST00000548801 2630 ntBASIC16.82■□□□□ 0.28
COL4A5P29400 MIR632-201ENST00000385193 94 ntBASIC16.81■□□□□ 0.28
COL4A5P29400 AL137244.1-201ENST00000422931 865 ntBASIC16.81■□□□□ 0.28
COL4A5P29400 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A5P29400 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A5P29400 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A5P29400 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC16.81■□□□□ 0.28
COL4A5P29400 AC011431.1-201ENST00000512971 230 ntBASIC16.81■□□□□ 0.28
COL4A5P29400 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC16.81■□□□□ 0.28
COL4A5P29400 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A5P29400 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A5P29400 RN7SL605P-201ENST00000577229 281 ntBASIC16.81■□□□□ 0.28
COL4A5P29400 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 AC123912.6-201ENST00000612657 315 ntBASIC16.81■□□□□ 0.28
COL4A5P29400 AC048382.6-201ENST00000621980 1223 ntBASIC16.81■□□□□ 0.28
COL4A5P29400 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A5P29400 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A5P29400 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A5P29400 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A5P29400 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL4A5P29400 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
COL4A5P29400 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A5P29400 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 SNX15-201ENST00000352068 771 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A5P29400 RPSAP6-201ENST00000417882 882 ntBASIC16.81■□□□□ 0.28
COL4A5P29400 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL4A5P29400 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A5P29400 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A5P29400 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC16.81■□□□□ 0.28
COL4A5P29400 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.81■□□□□ 0.28
COL4A5P29400 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC16.81■□□□□ 0.28
COL4A5P29400 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms