Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.28■□□□□ 0.04
APOEP02649 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 TUBB8P8-201ENST00000458717 1058 ntBASIC15.28■□□□□ 0.04
APOEP02649 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15.28■□□□□ 0.04
APOEP02649 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.28■□□□□ 0.04
APOEP02649 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
APOEP02649 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 AC243960.2-201ENST00000600996 747 ntBASIC15.28■□□□□ 0.04
APOEP02649 AL118558.3-201ENST00000607414 1079 ntBASIC15.28■□□□□ 0.04
APOEP02649 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 MIR6869-201ENST00000619434 62 ntBASIC15.28■□□□□ 0.04
APOEP02649 AL008638.5-201ENST00000623814 1298 ntBASIC15.28■□□□□ 0.04
APOEP02649 AL162426.1-201ENST00000624141 743 ntBASIC15.28■□□□□ 0.04
APOEP02649 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 AL928921.2-201ENST00000641325 2442 ntBASIC15.28■□□□□ 0.04
APOEP02649 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.28■□□□□ 0.04
APOEP02649 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
APOEP02649 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
APOEP02649 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
APOEP02649 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.28■□□□□ 0.04
APOEP02649 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.28■□□□□ 0.04
APOEP02649 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
APOEP02649 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC15.27■□□□□ 0.04
APOEP02649 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.27■□□□□ 0.04
APOEP02649 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
APOEP02649 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
APOEP02649 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.27■□□□□ 0.04
APOEP02649 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
APOEP02649 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
APOEP02649 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
APOEP02649 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC15.27■□□□□ 0.04
APOEP02649 AC012441.2-201ENST00000444843 739 ntBASIC15.27■□□□□ 0.04
APOEP02649 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.27■□□□□ 0.04
APOEP02649 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.27■□□□□ 0.04
APOEP02649 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 AC022447.6-201ENST00000515522 438 ntBASIC15.27■□□□□ 0.04
APOEP02649 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.27■□□□□ 0.04
APOEP02649 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.27■□□□□ 0.04
APOEP02649 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC15.27■□□□□ 0.04
APOEP02649 NAT9-222ENST00000583476 583 ntTSL 3 BASIC15.27■□□□□ 0.04
APOEP02649 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC15.27■□□□□ 0.04
APOEP02649 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
APOEP02649 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.27■□□□□ 0.04
APOEP02649 AC009884.2-201ENST00000603110 324 ntBASIC15.27■□□□□ 0.04
APOEP02649 MIR6720-201ENST00000611664 98 ntBASIC15.27■□□□□ 0.04
APOEP02649 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.27■□□□□ 0.04
APOEP02649 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.27■□□□□ 0.03
APOEP02649 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
APOEP02649 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
APOEP02649 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.27■□□□□ 0.03
APOEP02649 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
APOEP02649 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
APOEP02649 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.03
APOEP02649 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
APOEP02649 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
APOEP02649 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
APOEP02649 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
APOEP02649 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.26■□□□□ 0.03
APOEP02649 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.26■□□□□ 0.03
APOEP02649 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 AC009093.10-201ENST00000641956 1442 ntBASIC15.26■□□□□ 0.03
APOEP02649 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.26■□□□□ 0.03
APOEP02649 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
APOEP02649 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
APOEP02649 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
APOEP02649 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
APOEP02649 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms