Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLDN9O95484 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLDN9O95484 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
CLDN9O95484 AC087386.2-201ENST00000623212 4637 ntBASIC14.08□□□□□ -0.15
CLDN9O95484 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.08□□□□□ -0.15
CLDN9O95484 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.08□□□□□ -0.16
CLDN9O95484 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.08□□□□□ -0.16
CLDN9O95484 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
CLDN9O95484 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.08□□□□□ -0.16
CLDN9O95484 RPL7P3-201ENST00000441388 714 ntBASIC14.08□□□□□ -0.16
CLDN9O95484 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 HOMER2P2-201ENST00000451621 847 ntBASIC14.08□□□□□ -0.16
CLDN9O95484 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.08□□□□□ -0.16
CLDN9O95484 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.08□□□□□ -0.16
CLDN9O95484 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.08□□□□□ -0.16
CLDN9O95484 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.08□□□□□ -0.16
CLDN9O95484 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.08□□□□□ -0.16
CLDN9O95484 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.08□□□□□ -0.16
CLDN9O95484 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
CLDN9O95484 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLDN9O95484 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.07□□□□□ -0.16
CLDN9O95484 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CLDN9O95484 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.07□□□□□ -0.16
CLDN9O95484 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC14.07□□□□□ -0.16
CLDN9O95484 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.07□□□□□ -0.16
CLDN9O95484 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CLDN9O95484 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 AL022313.4-201ENST00000562756 2046 ntBASIC14.07□□□□□ -0.16
CLDN9O95484 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.07□□□□□ -0.16
CLDN9O95484 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CLDN9O95484 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.07□□□□□ -0.16
CLDN9O95484 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.07□□□□□ -0.16
CLDN9O95484 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 MIR326-201ENST00000362220 95 ntBASIC14.07□□□□□ -0.16
CLDN9O95484 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 CNN2P10-201ENST00000443067 918 ntBASIC14.07□□□□□ -0.16
CLDN9O95484 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.07□□□□□ -0.16
CLDN9O95484 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.07□□□□□ -0.16
CLDN9O95484 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
CLDN9O95484 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.07□□□□□ -0.16
CLDN9O95484 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.07□□□□□ -0.16
CLDN9O95484 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.07□□□□□ -0.16
CLDN9O95484 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CLDN9O95484 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.07□□□□□ -0.16
CLDN9O95484 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CLDN9O95484 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms