Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.54□□□□□ -0.08
SHOX2O60902 TUBB4AP1-201ENST00000450755 1325 ntBASIC14.54□□□□□ -0.08
SHOX2O60902 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.54□□□□□ -0.08
SHOX2O60902 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SHOX2O60902 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.54□□□□□ -0.08
SHOX2O60902 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC14.54□□□□□ -0.08
SHOX2O60902 SYTL4-201ENST00000263033 2335 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SHOX2O60902 PDZRN3-205ENST00000466780 2737 ntTSL 2 BASIC14.54□□□□□ -0.08
SHOX2O60902 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SHOX2O60902 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHOX2O60902 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
SHOX2O60902 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHOX2O60902 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 KLHL24-211ENST00000476808 2126 ntTSL 2 BASIC14.53□□□□□ -0.08
SHOX2O60902 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHOX2O60902 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHOX2O60902 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SHOX2O60902 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHOX2O60902 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SHOX2O60902 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
SHOX2O60902 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.53□□□□□ -0.08
SHOX2O60902 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.53□□□□□ -0.08
SHOX2O60902 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.53□□□□□ -0.08
SHOX2O60902 AC069335.1-201ENST00000489972 472 ntBASIC14.53□□□□□ -0.08
SHOX2O60902 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
SHOX2O60902 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC14.53□□□□□ -0.08
SHOX2O60902 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.53□□□□□ -0.08
SHOX2O60902 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.53□□□□□ -0.08
SHOX2O60902 MIR6069-201ENST00000620069 79 ntBASIC14.53□□□□□ -0.08
SHOX2O60902 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHOX2O60902 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHOX2O60902 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHOX2O60902 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 DYNC1I2-204ENST00000409317 2196 ntTSL 5 BASIC14.53□□□□□ -0.08
SHOX2O60902 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC14.53□□□□□ -0.08
SHOX2O60902 GLO1-201ENST00000373365 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHOX2O60902 HSPA8P9-201ENST00000485881 1943 ntBASIC14.53□□□□□ -0.08
SHOX2O60902 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHOX2O60902 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.52□□□□□ -0.08
SHOX2O60902 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SHOX2O60902 CASS4-202ENST00000434344 2888 ntTSL 2 BASIC14.52□□□□□ -0.08
SHOX2O60902 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.52□□□□□ -0.08
SHOX2O60902 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SHOX2O60902 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SHOX2O60902 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SHOX2O60902 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC14.52□□□□□ -0.08
SHOX2O60902 AL590440.2-201ENST00000641973 1595 ntBASIC14.52□□□□□ -0.08
SHOX2O60902 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SHOX2O60902 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
SHOX2O60902 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SHOX2O60902 CSF3R-201ENST00000331941 2375 ntTSL 5 BASIC14.52□□□□□ -0.08
SHOX2O60902 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SHOX2O60902 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SHOX2O60902 TUBB3P1-201ENST00000405796 1332 ntBASIC14.52□□□□□ -0.08
SHOX2O60902 MSH5-204ENST00000375755 3094 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
SHOX2O60902 AL031432.4-201ENST00000641729 2190 ntBASIC14.52□□□□□ -0.08
SHOX2O60902 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SHOX2O60902 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHOX2O60902 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SHOX2O60902 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SHOX2O60902 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
SHOX2O60902 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.52□□□□□ -0.09
SHOX2O60902 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SHOX2O60902 AC004832.2-201ENST00000426397 482 ntBASIC14.52□□□□□ -0.09
SHOX2O60902 AL592309.1-201ENST00000443127 649 ntBASIC14.52□□□□□ -0.09
SHOX2O60902 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.52□□□□□ -0.09
SHOX2O60902 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.52□□□□□ -0.09
SHOX2O60902 AC026434.2-201ENST00000506094 1078 ntBASIC14.52□□□□□ -0.09
SHOX2O60902 GCOM2-201ENST00000509133 1104 ntBASIC14.52□□□□□ -0.09
SHOX2O60902 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHOX2O60902 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.52□□□□□ -0.09
SHOX2O60902 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC14.52□□□□□ -0.09
SHOX2O60902 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.09
SHOX2O60902 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
SHOX2O60902 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
SHOX2O60902 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.52□□□□□ -0.09
SHOX2O60902 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.52□□□□□ -0.09
SHOX2O60902 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC14.52□□□□□ -0.09
SHOX2O60902 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.52□□□□□ -0.09
SHOX2O60902 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.52□□□□□ -0.09
SHOX2O60902 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.52□□□□□ -0.09
SHOX2O60902 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.52□□□□□ -0.09
SHOX2O60902 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.52□□□□□ -0.09
SHOX2O60902 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.52□□□□□ -0.09
SHOX2O60902 ARFIP2-210ENST00000614314 3846 ntTSL 2 BASIC14.52□□□□□ -0.09
SHOX2O60902 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.52□□□□□ -0.09
SHOX2O60902 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms