Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
CTDP1Q9Y5B0 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 CAP2P1-201ENST00000557743 1390 ntBASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 FUK-202ENST00000378912 3925 ntTSL 2 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 LINC01165-201ENST00000445190 1623 ntBASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 OR2K2-202ENST00000374428 1038 ntBASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 NEU3-205ENST00000531619 582 ntTSL 5 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 AC027237.1-201ENST00000560942 655 ntBASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 AC103810.10-201ENST00000606504 343 ntBASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 AC103691.2-201ENST00000618824 433 ntBASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 AC007718.1-201ENST00000621078 280 ntBASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 DMBT1P1-203ENST00000636837 4628 ntBASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 AL596257.1-201ENST00000641463 2694 ntBASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CTDP1Q9Y5B0 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 TCAF2P1-201ENST00000291129 2421 ntBASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 RNA5SP359-201ENST00000364838 113 ntBASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 AL583805.1-201ENST00000391389 531 ntBASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 GAS5-209ENST00000430245 723 ntTSL 3 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 AP000358.1-201ENST00000456260 156 ntBASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 LY6E-208ENST00000520531 490 ntTSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 KHSRPP1-201ENST00000427983 1768 ntBASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 LINC00528-201ENST00000600723 2160 ntBASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CTDP1Q9Y5B0 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms